Marinobacter persicus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2913 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I3UGW0|A0A1I3UGW0_9ALTE Secondary thiamine-phosphate synthase enzyme OS=Marinobacter persicus OX=930118 GN=SAMN05216429_106106 PE=3 SV=1
MM1 pKa = 7.39SSSGGGDD8 pKa = 3.1INIGGGSGLYY18 pKa = 9.35TVDD21 pKa = 3.0GCAYY25 pKa = 10.37SCGSNPAKK33 pKa = 9.88WDD35 pKa = 3.51GNHH38 pKa = 6.93TYY40 pKa = 10.79GQTLEE45 pKa = 4.22CKK47 pKa = 10.2GLGVTPEE54 pKa = 3.71EE55 pKa = 4.59AEE57 pKa = 4.07AGEE60 pKa = 4.98AGPADD65 pKa = 4.63LNCATDD71 pKa = 3.36SSGKK75 pKa = 9.55EE76 pKa = 3.68ICSDD80 pKa = 3.91PDD82 pKa = 3.35NPSCVTIDD90 pKa = 4.92GISTCPSEE98 pKa = 5.34GAICDD103 pKa = 4.19EE104 pKa = 4.49LNGDD108 pKa = 5.04LGCIDD113 pKa = 4.16PAEE116 pKa = 4.41EE117 pKa = 4.3GCAYY121 pKa = 10.78RR122 pKa = 11.84NGKK125 pKa = 8.47KK126 pKa = 9.45EE127 pKa = 4.02CYY129 pKa = 9.9DD130 pKa = 3.03IFGQYY135 pKa = 9.11IEE137 pKa = 5.38HH138 pKa = 7.9DD139 pKa = 4.4SPDD142 pKa = 3.48HH143 pKa = 6.48PNNGGNMDD151 pKa = 4.32GDD153 pKa = 4.19TSNDD157 pKa = 3.21MTDD160 pKa = 3.5PRR162 pKa = 11.84PEE164 pKa = 4.68GEE166 pKa = 4.99GGDD169 pKa = 4.4PNNQPGDD176 pKa = 3.75STGEE180 pKa = 3.97GGEE183 pKa = 4.19ATEE186 pKa = 4.48GTAKK190 pKa = 10.47EE191 pKa = 4.16SLEE194 pKa = 3.81QQKK197 pKa = 10.34IGNEE201 pKa = 3.87KK202 pKa = 10.37LDD204 pKa = 4.59GIEE207 pKa = 4.15EE208 pKa = 4.35STGNIDD214 pKa = 3.65EE215 pKa = 5.44AIEE218 pKa = 4.13AALDD222 pKa = 3.47ASRR225 pKa = 11.84GDD227 pKa = 3.49GTALKK232 pKa = 10.72NGIDD236 pKa = 3.98DD237 pKa = 5.57AISNAGDD244 pKa = 3.78SAVGDD249 pKa = 4.1LDD251 pKa = 3.63EE252 pKa = 6.69HH253 pKa = 8.03IDD255 pKa = 4.9GIDD258 pKa = 3.32SPAPMNEE265 pKa = 3.68GDD267 pKa = 5.11LGAIEE272 pKa = 5.0NNVTNLFAGSMQCRR286 pKa = 11.84DD287 pKa = 3.58LVFGTDD293 pKa = 3.53EE294 pKa = 3.55ISYY297 pKa = 9.25TITCNDD303 pKa = 2.87MSMIRR308 pKa = 11.84DD309 pKa = 3.42MLGFLLYY316 pKa = 10.39GFTVIRR322 pKa = 11.84LFNVALRR329 pKa = 11.84PAAKK333 pKa = 8.27GTPP336 pKa = 3.43

Molecular weight: 34.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I3V6M6|A0A1I3V6M6_9ALTE RecBCD enzyme subunit RecD OS=Marinobacter persicus OX=930118 GN=recD PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.04RR14 pKa = 11.84AHH16 pKa = 6.12GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.91VLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.44GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2913

0

2913

959929

29

5842

329.5

36.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.819 ± 0.05

0.902 ± 0.015

5.87 ± 0.045

6.904 ± 0.05

3.687 ± 0.029

7.78 ± 0.061

2.26 ± 0.025

5.124 ± 0.035

3.758 ± 0.043

10.704 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.556 ± 0.021

3.293 ± 0.037

4.673 ± 0.036

4.246 ± 0.033

6.524 ± 0.039

5.647 ± 0.038

5.132 ± 0.035

7.256 ± 0.041

1.357 ± 0.017

2.509 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski