Pelagivirga sediminicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagivirga

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3729 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T7G4T3|A0A2T7G4T3_9RHOB Phosphoenolpyruvate carboxykinase (ATP) OS=Pelagivirga sediminicola OX=2170575 GN=pckA PE=3 SV=1
MM1 pKa = 7.86KK2 pKa = 10.29YY3 pKa = 10.47LLSATAASALLAGTAFAGNIEE24 pKa = 4.57SAPMEE29 pKa = 4.36PVIAPAPAPVFTSPNWTGFYY49 pKa = 10.57AGGQLGYY56 pKa = 11.02ADD58 pKa = 3.99ISGSGTGFAGDD69 pKa = 3.68RR70 pKa = 11.84DD71 pKa = 3.94GDD73 pKa = 4.16GVDD76 pKa = 4.87DD77 pKa = 5.27NVDD80 pKa = 3.21ADD82 pKa = 3.97GFPIPFGFSANGDD95 pKa = 3.62GMIGGLTVGYY105 pKa = 10.02DD106 pKa = 3.49YY107 pKa = 11.93DD108 pKa = 3.54MGDD111 pKa = 3.37WVVGAAADD119 pKa = 4.03YY120 pKa = 10.27DD121 pKa = 3.73WTDD124 pKa = 2.86ISVGGLALDD133 pKa = 5.22DD134 pKa = 4.7DD135 pKa = 6.03DD136 pKa = 5.07IAIGYY141 pKa = 7.35GTTIEE146 pKa = 4.5SIWRR150 pKa = 11.84AKK152 pKa = 9.97LRR154 pKa = 11.84AGYY157 pKa = 10.45KK158 pKa = 10.05LGNGLLYY165 pKa = 9.94ATAGYY170 pKa = 9.68AQADD174 pKa = 3.92TKK176 pKa = 11.47DD177 pKa = 2.94WGNTDD182 pKa = 3.47GYY184 pKa = 10.96FVGAGYY190 pKa = 10.61EE191 pKa = 4.11HH192 pKa = 7.19MVTQNISLGGEE203 pKa = 3.83ILYY206 pKa = 10.59HH207 pKa = 6.15EE208 pKa = 5.26FDD210 pKa = 3.69NFSGVNVPDD219 pKa = 3.68YY220 pKa = 11.0DD221 pKa = 4.07IEE223 pKa = 4.24ATTAQVRR230 pKa = 11.84ATFRR234 pKa = 11.84FF235 pKa = 3.67

Molecular weight: 24.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T7G739|A0A2T7G739_9RHOB Uncharacterized protein OS=Pelagivirga sediminicola OX=2170575 GN=DC366_08280 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3729

0

3729

1158833

26

1891

310.8

33.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.84 ± 0.064

0.904 ± 0.013

6.174 ± 0.034

5.653 ± 0.037

3.557 ± 0.026

8.823 ± 0.036

2.074 ± 0.019

5.316 ± 0.026

3.023 ± 0.034

10.023 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.91 ± 0.021

2.403 ± 0.02

5.112 ± 0.026

3.219 ± 0.021

7.024 ± 0.043

5.028 ± 0.028

5.327 ± 0.023

6.966 ± 0.035

1.411 ± 0.015

2.211 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski