Roseivivax halodurans JCM 10272

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseivivax; Roseivivax halodurans

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4304 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X7EL04|X7EL04_9RHOB LacI family transcription regulator OS=Roseivivax halodurans JCM 10272 OX=1449350 GN=OCH239_01700 PE=4 SV=1
MM1 pKa = 6.88FTRR4 pKa = 11.84AISTSVAALLLAGAAHH20 pKa = 6.56AQDD23 pKa = 3.21QSIIVQSTTSTANSGLYY40 pKa = 10.14DD41 pKa = 3.46HH42 pKa = 7.7LIPIFEE48 pKa = 4.47EE49 pKa = 4.18EE50 pKa = 3.89SGITVNVVAVGTGQAITNAEE70 pKa = 4.05NCDD73 pKa = 3.23GDD75 pKa = 4.51LLLVHH80 pKa = 7.15AKK82 pKa = 9.34PAEE85 pKa = 4.02EE86 pKa = 4.26AFVEE90 pKa = 4.2AGYY93 pKa = 8.52GTEE96 pKa = 4.46RR97 pKa = 11.84TDD99 pKa = 4.25LMYY102 pKa = 11.02NDD104 pKa = 4.27FVIVGPAEE112 pKa = 4.38DD113 pKa = 3.78PAGVDD118 pKa = 3.91GMEE121 pKa = 4.71DD122 pKa = 3.36AQDD125 pKa = 3.84ALSQIAGSGATFASRR140 pKa = 11.84GDD142 pKa = 3.9DD143 pKa = 3.29SGTHH147 pKa = 4.88QKK149 pKa = 10.24EE150 pKa = 3.67LSLWEE155 pKa = 4.35GTDD158 pKa = 3.57ADD160 pKa = 4.07PTSGSGEE167 pKa = 4.14WYY169 pKa = 10.28RR170 pKa = 11.84EE171 pKa = 4.0TGSGMGATLNAGIGMGAYY189 pKa = 10.58VMTDD193 pKa = 2.74RR194 pKa = 11.84ATWISFEE201 pKa = 4.09NKK203 pKa = 8.25QDD205 pKa = 3.68YY206 pKa = 10.03EE207 pKa = 4.22ILVEE211 pKa = 4.23GDD213 pKa = 2.96EE214 pKa = 5.6DD215 pKa = 4.77LFNQYY220 pKa = 9.89GVIPVSPDD228 pKa = 2.63HH229 pKa = 6.69CPSVNIEE236 pKa = 3.98AAEE239 pKa = 4.17TFADD243 pKa = 3.41WLLSAEE249 pKa = 4.08GQEE252 pKa = 4.71AIGAYY257 pKa = 8.45EE258 pKa = 4.15VEE260 pKa = 4.39GQQLFFPNAPASS272 pKa = 3.55

Molecular weight: 28.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X7EAB8|X7EAB8_9RHOB Integrase OS=Roseivivax halodurans JCM 10272 OX=1449350 GN=OCH239_14730 PE=4 SV=1
MM1 pKa = 7.57SRR3 pKa = 11.84TNLIAGVRR11 pKa = 11.84RR12 pKa = 11.84GTGRR16 pKa = 11.84ATGVRR21 pKa = 11.84RR22 pKa = 11.84AGWRR26 pKa = 11.84AGPRR30 pKa = 11.84RR31 pKa = 11.84MPSIGRR37 pKa = 11.84VV38 pKa = 3.14

Molecular weight: 4.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4304

0

4304

1296111

28

3670

301.1

32.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.66 ± 0.054

0.865 ± 0.013

6.121 ± 0.038

6.498 ± 0.04

3.567 ± 0.025

8.96 ± 0.039

2.008 ± 0.019

4.906 ± 0.027

2.599 ± 0.031

10.015 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.651 ± 0.019

2.234 ± 0.02

5.167 ± 0.029

2.863 ± 0.018

7.399 ± 0.044

5.248 ± 0.026

5.433 ± 0.023

7.293 ± 0.028

1.412 ± 0.014

2.102 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski