Chandipura virus (strain I653514) (CHPV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Vesiculovirus; Chandipura vesiculovirus; Chandipura virus

Average proteome isoelectric point is 7.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q9WH76|MATRX_CHAV Matrix protein OS=Chandipura virus (strain I653514) OX=11273 GN=M PE=1 SV=1
MM1 pKa = 7.99EE2 pKa = 6.5DD3 pKa = 3.3SQLYY7 pKa = 9.15QALKK11 pKa = 10.46NYY13 pKa = 8.16PKK15 pKa = 10.79LQDD18 pKa = 3.48TLDD21 pKa = 4.06SIEE24 pKa = 4.29NLEE27 pKa = 5.17DD28 pKa = 3.54DD29 pKa = 4.44TKK31 pKa = 11.23SEE33 pKa = 4.05PSEE36 pKa = 4.32CGSPTEE42 pKa = 4.25RR43 pKa = 11.84GIPSYY48 pKa = 11.14YY49 pKa = 10.23LAEE52 pKa = 4.33EE53 pKa = 4.11LDD55 pKa = 3.65EE56 pKa = 5.41CEE58 pKa = 4.8EE59 pKa = 4.18EE60 pKa = 5.66DD61 pKa = 5.62SEE63 pKa = 5.45EE64 pKa = 5.49DD65 pKa = 4.35DD66 pKa = 5.66DD67 pKa = 5.32NLPTEE72 pKa = 4.64IPDD75 pKa = 3.9PPTVDD80 pKa = 2.93MLEE83 pKa = 5.17AIMEE87 pKa = 4.2DD88 pKa = 4.12EE89 pKa = 4.9IDD91 pKa = 3.48DD92 pKa = 3.59TAYY95 pKa = 10.27QVHH98 pKa = 6.5FEE100 pKa = 5.15AKK102 pKa = 8.45QTWKK106 pKa = 10.32PVIEE110 pKa = 4.24TGGNEE115 pKa = 3.69RR116 pKa = 11.84GKK118 pKa = 9.53FTLSVPQNLSALQLLQWEE136 pKa = 4.59TGIHH140 pKa = 6.17ALAEE144 pKa = 4.11RR145 pKa = 11.84LGGCRR150 pKa = 11.84LLQISTRR157 pKa = 11.84GTRR160 pKa = 11.84DD161 pKa = 3.28GIEE164 pKa = 3.92FTVRR168 pKa = 11.84EE169 pKa = 4.52TPCVSPASDD178 pKa = 5.56PIPSTSRR185 pKa = 11.84SSSIASNVSTRR196 pKa = 11.84QTEE199 pKa = 4.55SPGSKK204 pKa = 10.32SNTSLGIPEE213 pKa = 4.86APANLIDD220 pKa = 4.02MGAIDD225 pKa = 5.6KK226 pKa = 10.4EE227 pKa = 4.53FILAAISPSDD237 pKa = 3.73PPYY240 pKa = 11.32KK241 pKa = 9.77NTLRR245 pKa = 11.84NLFGSGDD252 pKa = 3.47SFEE255 pKa = 5.11QYY257 pKa = 10.47NQTGIYY263 pKa = 9.01SLKK266 pKa = 9.69EE267 pKa = 3.52LVIAGLKK274 pKa = 10.27RR275 pKa = 11.84KK276 pKa = 9.84GIYY279 pKa = 9.28NRR281 pKa = 11.84IRR283 pKa = 11.84IRR285 pKa = 11.84CHH287 pKa = 7.41LEE289 pKa = 3.46PQFNN293 pKa = 3.59

Molecular weight: 32.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9WH77|Q9WH77_CHAV Isoform of P13180 Glycoprotein G (Fragment) OS=Chandipura virus (strain I653514) OX=11273 GN=G PE=4 SV=1
GG1 pKa = 7.42LKK3 pKa = 10.34RR4 pKa = 11.84KK5 pKa = 9.87GIYY8 pKa = 9.28NRR10 pKa = 11.84IRR12 pKa = 11.84IRR14 pKa = 11.84CHH16 pKa = 7.41LEE18 pKa = 3.46PQFNN22 pKa = 3.59

Molecular weight: 2.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

2

7

3637

22

2092

519.6

58.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.839 ± 0.514

1.677 ± 0.307

5.884 ± 0.373

5.884 ± 0.813

4.372 ± 0.364

5.966 ± 0.451

2.42 ± 0.33

6.736 ± 0.511

6.956 ± 0.493

9.733 ± 0.699

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.557 ± 0.343

4.344 ± 0.421

4.922 ± 0.664

2.969 ± 0.317

5.197 ± 0.495

8.853 ± 0.593

5.911 ± 0.613

5.527 ± 0.729

1.925 ± 0.272

3.327 ± 0.137
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski