Amino acid dipepetide frequency for Chandipura virus (strain I653514) (CHPV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.675AlaAla: 4.675 ± 0.467
0.825AlaCys: 0.825 ± 0.447
2.2AlaAsp: 2.2 ± 0.373
3.025AlaGlu: 3.025 ± 1.046
1.375AlaPhe: 1.375 ± 1.535
2.75AlaGly: 2.75 ± 1.034
0.825AlaHis: 0.825 ± 0.315
4.125AlaIle: 4.125 ± 1.753
2.75AlaLys: 2.75 ± 1.022
5.501AlaLeu: 5.501 ± 0.796
1.375AlaMet: 1.375 ± 0.412
3.025AlaAsn: 3.025 ± 0.466
1.1AlaPro: 1.1 ± 0.704
1.375AlaGln: 1.375 ± 0.468
2.75AlaArg: 2.75 ± 0.467
3.85AlaSer: 3.85 ± 0.984
1.925AlaThr: 1.925 ± 0.273
2.75AlaVal: 2.75 ± 0.959
0.55AlaTrp: 0.55 ± 0.865
1.65AlaTyr: 1.65 ± 0.959
0.0AlaXaa: 0.0 ± 0.0
Cys
0.825CysAla: 0.825 ± 0.346
0.275CysCys: 0.275 ± 0.149
1.375CysAsp: 1.375 ± 1.148
0.275CysGlu: 0.275 ± 0.377
0.825CysPhe: 0.825 ± 0.315
2.2CysGly: 2.2 ± 0.793
0.825CysHis: 0.825 ± 0.724
0.825CysIle: 0.825 ± 0.346
1.1CysLys: 1.1 ± 0.391
0.825CysLeu: 0.825 ± 0.346
0.275CysMet: 0.275 ± 0.149
0.55CysAsn: 0.55 ± 0.298
1.1CysPro: 1.1 ± 0.71
0.825CysGln: 0.825 ± 0.315
1.925CysArg: 1.925 ± 0.554
0.275CysSer: 0.275 ± 0.149
0.55CysThr: 0.55 ± 0.27
1.375CysVal: 1.375 ± 0.473
0.55CysTrp: 0.55 ± 0.298
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.65AspAla: 1.65 ± 0.593
0.55AspCys: 0.55 ± 0.476
5.226AspAsp: 5.226 ± 1.221
2.475AspGlu: 2.475 ± 0.571
2.2AspPhe: 2.2 ± 0.685
3.85AspGly: 3.85 ± 0.467
0.825AspHis: 0.825 ± 0.361
3.025AspIle: 3.025 ± 1.25
4.4AspLys: 4.4 ± 0.306
5.776AspLeu: 5.776 ± 1.708
3.025AspMet: 3.025 ± 1.255
1.925AspAsn: 1.925 ± 0.456
4.125AspPro: 4.125 ± 0.788
1.65AspGln: 1.65 ± 0.414
1.65AspArg: 1.65 ± 0.745
4.675AspSer: 4.675 ± 1.596
3.85AspThr: 3.85 ± 1.205
2.75AspVal: 2.75 ± 0.526
1.1AspTrp: 1.1 ± 0.474
4.125AspTyr: 4.125 ± 1.25
0.0AspXaa: 0.0 ± 0.0
Glu
2.475GluAla: 2.475 ± 1.36
1.375GluCys: 1.375 ± 0.918
4.4GluAsp: 4.4 ± 2.194
4.125GluGlu: 4.125 ± 1.11
3.575GluPhe: 3.575 ± 0.551
1.925GluGly: 1.925 ± 0.569
0.55GluHis: 0.55 ± 0.298
4.4GluIle: 4.4 ± 1.147
4.125GluLys: 4.125 ± 0.92
7.151GluLeu: 7.151 ± 0.599
0.825GluMet: 0.825 ± 0.432
1.65GluAsn: 1.65 ± 0.539
2.75GluPro: 2.75 ± 1.334
1.65GluGln: 1.65 ± 0.369
2.475GluArg: 2.475 ± 1.359
6.326GluSer: 6.326 ± 2.167
3.3GluThr: 3.3 ± 1.367
2.475GluVal: 2.475 ± 0.696
1.1GluTrp: 1.1 ± 0.651
2.2GluTyr: 2.2 ± 0.675
0.0GluXaa: 0.0 ± 0.0
Phe
2.2PheAla: 2.2 ± 0.936
0.275PheCys: 0.275 ± 0.433
1.65PheAsp: 1.65 ± 0.593
2.2PheGlu: 2.2 ± 0.591
2.475PhePhe: 2.475 ± 0.597
3.025PheGly: 3.025 ± 0.916
1.375PheHis: 1.375 ± 0.795
2.75PheIle: 2.75 ± 0.544
3.3PheLys: 3.3 ± 0.828
4.4PheLeu: 4.4 ± 1.22
0.825PheMet: 0.825 ± 0.447
1.925PheAsn: 1.925 ± 0.962
3.575PhePro: 3.575 ± 1.196
0.825PheGln: 0.825 ± 0.447
3.85PheArg: 3.85 ± 1.293
2.2PheSer: 2.2 ± 1.191
3.025PheThr: 3.025 ± 2.178
2.2PheVal: 2.2 ± 0.312
1.375PheTrp: 1.375 ± 0.416
0.275PheTyr: 0.275 ± 0.408
0.0PheXaa: 0.0 ± 0.0
Gly
2.475GlyAla: 2.475 ± 0.81
0.55GlyCys: 0.55 ± 0.304
3.575GlyAsp: 3.575 ± 0.252
2.2GlyGlu: 2.2 ± 0.799
2.475GlyPhe: 2.475 ± 0.941
4.125GlyGly: 4.125 ± 1.085
0.55GlyHis: 0.55 ± 0.27
6.601GlyIle: 6.601 ± 2.521
4.4GlyLys: 4.4 ± 0.743
6.876GlyLeu: 6.876 ± 0.821
1.375GlyMet: 1.375 ± 0.504
2.2GlyAsn: 2.2 ± 0.852
2.475GlyPro: 2.475 ± 0.812
2.475GlyGln: 2.475 ± 1.35
3.3GlyArg: 3.3 ± 0.795
3.85GlySer: 3.85 ± 0.95
3.3GlyThr: 3.3 ± 0.516
3.575GlyVal: 3.575 ± 1.093
1.1GlyTrp: 1.1 ± 0.412
1.925GlyTyr: 1.925 ± 0.583
0.0GlyXaa: 0.0 ± 0.0
His
1.65HisAla: 1.65 ± 0.861
0.0HisCys: 0.0 ± 0.0
0.55HisAsp: 0.55 ± 0.298
1.375HisGlu: 1.375 ± 0.657
1.925HisPhe: 1.925 ± 0.661
1.65HisGly: 1.65 ± 0.738
1.1HisHis: 1.1 ± 0.28
1.65HisIle: 1.65 ± 0.893
0.825HisLys: 0.825 ± 0.447
2.2HisLeu: 2.2 ± 0.694
0.55HisMet: 0.55 ± 0.387
1.1HisAsn: 1.1 ± 0.54
1.65HisPro: 1.65 ± 0.666
1.1HisGln: 1.1 ± 0.596
0.825HisArg: 0.825 ± 0.447
1.925HisSer: 1.925 ± 0.583
0.825HisThr: 0.825 ± 0.432
1.375HisVal: 1.375 ± 0.266
1.375HisTrp: 1.375 ± 0.533
0.55HisTyr: 0.55 ± 0.298
0.0HisXaa: 0.0 ± 0.0
Ile
4.125IleAla: 4.125 ± 0.771
0.55IleCys: 0.55 ± 0.27
4.95IleAsp: 4.95 ± 0.81
3.3IleGlu: 3.3 ± 0.87
2.475IlePhe: 2.475 ± 0.56
3.025IleGly: 3.025 ± 0.561
2.475IleHis: 2.475 ± 0.667
1.65IleIle: 1.65 ± 0.655
3.85IleLys: 3.85 ± 0.659
6.326IleLeu: 6.326 ± 1.527
1.375IleMet: 1.375 ± 0.535
2.475IleAsn: 2.475 ± 1.005
4.675IlePro: 4.675 ± 1.317
2.75IleGln: 2.75 ± 0.809
7.976IleArg: 7.976 ± 2.212
5.776IleSer: 5.776 ± 0.946
2.475IleThr: 2.475 ± 0.769
3.025IleVal: 3.025 ± 0.805
1.1IleTrp: 1.1 ± 0.392
3.025IleTyr: 3.025 ± 0.721
0.0IleXaa: 0.0 ± 0.0
Lys
1.1LysAla: 1.1 ± 0.391
1.375LysCys: 1.375 ± 0.537
3.85LysAsp: 3.85 ± 1.68
5.501LysGlu: 5.501 ± 0.872
3.575LysPhe: 3.575 ± 0.34
5.226LysGly: 5.226 ± 0.911
1.375LysHis: 1.375 ± 0.266
3.85LysIle: 3.85 ± 1.393
6.326LysLys: 6.326 ± 2.192
5.776LysLeu: 5.776 ± 1.084
1.1LysMet: 1.1 ± 0.438
4.675LysAsn: 4.675 ± 1.069
4.4LysPro: 4.4 ± 0.85
1.65LysGln: 1.65 ± 0.499
2.75LysArg: 2.75 ± 0.489
5.776LysSer: 5.776 ± 1.276
4.675LysThr: 4.675 ± 1.08
2.75LysVal: 2.75 ± 0.836
1.925LysTrp: 1.925 ± 0.583
1.925LysTyr: 1.925 ± 0.831
0.0LysXaa: 0.0 ± 0.0
Leu
4.125LeuAla: 4.125 ± 1.052
2.2LeuCys: 2.2 ± 0.877
5.776LeuAsp: 5.776 ± 0.97
6.876LeuGlu: 6.876 ± 1.266
3.575LeuPhe: 3.575 ± 0.252
4.675LeuGly: 4.675 ± 1.018
2.2LeuHis: 2.2 ± 0.685
8.526LeuIle: 8.526 ± 1.646
8.251LeuLys: 8.251 ± 1.45
7.426LeuLeu: 7.426 ± 0.999
2.2LeuMet: 2.2 ± 0.853
4.675LeuAsn: 4.675 ± 1.523
3.575LeuPro: 3.575 ± 1.165
3.85LeuGln: 3.85 ± 1.246
5.226LeuArg: 5.226 ± 1.201
11.276LeuSer: 11.276 ± 1.309
4.125LeuThr: 4.125 ± 0.637
4.675LeuVal: 4.675 ± 0.513
1.1LeuTrp: 1.1 ± 0.391
3.025LeuTyr: 3.025 ± 1.138
0.0LeuXaa: 0.0 ± 0.0
Met
1.1MetAla: 1.1 ± 0.596
0.275MetCys: 0.275 ± 0.149
1.1MetAsp: 1.1 ± 0.438
2.75MetGlu: 2.75 ± 1.07
0.55MetPhe: 0.55 ± 0.362
3.575MetGly: 3.575 ± 0.677
0.55MetHis: 0.55 ± 0.298
1.65MetIle: 1.65 ± 0.472
1.925MetLys: 1.925 ± 0.505
1.925MetLeu: 1.925 ± 0.713
1.65MetMet: 1.65 ± 0.726
0.275MetAsn: 0.275 ± 0.149
0.275MetPro: 0.275 ± 0.433
1.1MetGln: 1.1 ± 0.723
1.375MetArg: 1.375 ± 0.567
1.925MetSer: 1.925 ± 0.719
2.2MetThr: 2.2 ± 0.793
0.55MetVal: 0.55 ± 0.362
0.275MetTrp: 0.275 ± 0.302
0.55MetTyr: 0.55 ± 0.362
0.0MetXaa: 0.0 ± 0.0
Asn
3.025AsnAla: 3.025 ± 0.989
0.0AsnCys: 0.0 ± 0.0
1.65AsnAsp: 1.65 ± 0.692
2.2AsnGlu: 2.2 ± 0.539
2.475AsnPhe: 2.475 ± 0.718
3.025AsnGly: 3.025 ± 0.894
1.375AsnHis: 1.375 ± 0.744
3.3AsnIle: 3.3 ± 0.944
1.1AsnLys: 1.1 ± 0.446
5.226AsnLeu: 5.226 ± 1.435
1.1AsnMet: 1.1 ± 0.478
1.375AsnAsn: 1.375 ± 0.533
3.025AsnPro: 3.025 ± 0.974
1.65AsnGln: 1.65 ± 0.58
0.825AsnArg: 0.825 ± 0.554
3.575AsnSer: 3.575 ± 0.685
2.75AsnThr: 2.75 ± 1.214
2.2AsnVal: 2.2 ± 0.731
0.825AsnTrp: 0.825 ± 0.346
2.75AsnTyr: 2.75 ± 1.136
0.0AsnXaa: 0.0 ± 0.0
Pro
3.025ProAla: 3.025 ± 0.463
0.55ProCys: 0.55 ± 0.304
2.75ProAsp: 2.75 ± 0.696
1.925ProGlu: 1.925 ± 0.869
1.65ProPhe: 1.65 ± 0.745
2.2ProGly: 2.2 ± 1.426
1.925ProHis: 1.925 ± 0.718
3.025ProIle: 3.025 ± 0.427
1.925ProLys: 1.925 ± 0.816
5.501ProLeu: 5.501 ± 1.795
1.375ProMet: 1.375 ± 0.605
2.2ProAsn: 2.2 ± 0.64
2.75ProPro: 2.75 ± 0.564
1.1ProGln: 1.1 ± 1.021
0.825ProArg: 0.825 ± 0.447
6.051ProSer: 6.051 ± 1.757
4.125ProThr: 4.125 ± 0.782
4.95ProVal: 4.95 ± 0.641
0.55ProTrp: 0.55 ± 0.27
0.825ProTyr: 0.825 ± 0.997
0.0ProXaa: 0.0 ± 0.0
Gln
1.65GlnAla: 1.65 ± 0.369
0.825GlnCys: 0.825 ± 0.346
1.65GlnAsp: 1.65 ± 0.917
0.825GlnGlu: 0.825 ± 0.669
1.65GlnPhe: 1.65 ± 0.583
1.1GlnGly: 1.1 ± 0.438
0.0GlnHis: 0.0 ± 0.0
1.925GlnIle: 1.925 ± 0.431
1.65GlnLys: 1.65 ± 0.438
4.125GlnLeu: 4.125 ± 0.615
0.825GlnMet: 0.825 ± 0.447
1.375GlnAsn: 1.375 ± 0.352
0.275GlnPro: 0.275 ± 0.149
0.275GlnGln: 0.275 ± 0.149
2.2GlnArg: 2.2 ± 0.312
2.475GlnSer: 2.475 ± 1.098
2.75GlnThr: 2.75 ± 1.024
1.925GlnVal: 1.925 ± 0.635
1.1GlnTrp: 1.1 ± 0.354
1.1GlnTyr: 1.1 ± 0.493
0.0GlnXaa: 0.0 ± 0.0
Arg
2.75ArgAla: 2.75 ± 1.122
1.65ArgCys: 1.65 ± 0.5
3.025ArgAsp: 3.025 ± 0.965
4.4ArgGlu: 4.4 ± 1.325
2.2ArgPhe: 2.2 ± 1.034
4.4ArgGly: 4.4 ± 1.121
1.1ArgHis: 1.1 ± 0.596
3.025ArgIle: 3.025 ± 1.244
4.125ArgLys: 4.125 ± 0.752
3.85ArgLeu: 3.85 ± 0.527
1.925ArgMet: 1.925 ± 0.435
3.025ArgAsn: 3.025 ± 0.587
1.1ArgPro: 1.1 ± 0.596
1.375ArgGln: 1.375 ± 0.473
1.65ArgArg: 1.65 ± 0.655
4.675ArgSer: 4.675 ± 0.656
2.475ArgThr: 2.475 ± 0.696
3.025ArgVal: 3.025 ± 0.886
1.1ArgTrp: 1.1 ± 0.412
1.1ArgTyr: 1.1 ± 0.71
0.0ArgXaa: 0.0 ± 0.0
Ser
3.575SerAla: 3.575 ± 0.904
0.55SerCys: 0.55 ± 0.27
6.051SerAsp: 6.051 ± 1.253
6.051SerGlu: 6.051 ± 0.608
4.675SerPhe: 4.675 ± 1.043
3.85SerGly: 3.85 ± 0.976
2.475SerHis: 2.475 ± 0.496
6.601SerIle: 6.601 ± 1.821
5.226SerLys: 5.226 ± 1.399
7.151SerLeu: 7.151 ± 1.194
1.65SerMet: 1.65 ± 0.745
3.575SerAsn: 3.575 ± 0.736
4.4SerPro: 4.4 ± 1.564
3.3SerGln: 3.3 ± 0.859
3.85SerArg: 3.85 ± 1.067
7.701SerSer: 7.701 ± 0.512
6.601SerThr: 6.601 ± 1.086
5.776SerVal: 5.776 ± 1.462
1.1SerTrp: 1.1 ± 0.412
4.4SerTyr: 4.4 ± 1.208
0.0SerXaa: 0.0 ± 0.0
Thr
3.85ThrAla: 3.85 ± 0.968
1.925ThrCys: 1.925 ± 0.831
1.65ThrAsp: 1.65 ± 0.31
2.75ThrGlu: 2.75 ± 0.847
1.375ThrPhe: 1.375 ± 0.537
3.575ThrGly: 3.575 ± 0.863
1.375ThrHis: 1.375 ± 0.533
2.75ThrIle: 2.75 ± 0.485
5.226ThrLys: 5.226 ± 2.08
4.95ThrLeu: 4.95 ± 1.345
1.375ThrMet: 1.375 ± 0.744
2.475ThrAsn: 2.475 ± 0.718
4.125ThrPro: 4.125 ± 2.063
1.375ThrGln: 1.375 ± 0.402
3.575ThrArg: 3.575 ± 1.723
6.601ThrSer: 6.601 ± 1.004
3.3ThrThr: 3.3 ± 0.4
4.675ThrVal: 4.675 ± 0.623
1.65ThrTrp: 1.65 ± 0.588
0.55ThrTyr: 0.55 ± 0.298
0.0ThrXaa: 0.0 ± 0.0
Val
2.2ValAla: 2.2 ± 0.555
1.375ValCys: 1.375 ± 0.48
4.675ValAsp: 4.675 ± 0.604
3.85ValGlu: 3.85 ± 1.659
2.2ValPhe: 2.2 ± 1.038
1.375ValGly: 1.375 ± 0.54
1.375ValHis: 1.375 ± 0.457
4.675ValIle: 4.675 ± 1.121
2.75ValLys: 2.75 ± 0.485
6.601ValLeu: 6.601 ± 1.703
0.825ValMet: 0.825 ± 0.331
1.925ValAsn: 1.925 ± 0.699
2.75ValPro: 2.75 ± 0.558
0.275ValGln: 0.275 ± 0.433
3.025ValArg: 3.025 ± 0.674
4.4ValSer: 4.4 ± 1.178
4.95ValThr: 4.95 ± 1.538
3.575ValVal: 3.575 ± 0.997
0.825ValTrp: 0.825 ± 0.361
1.65ValTyr: 1.65 ± 0.692
0.0ValXaa: 0.0 ± 0.0
Trp
0.55TrpAla: 0.55 ± 0.362
0.0TrpCys: 0.0 ± 0.0
1.375TrpAsp: 1.375 ± 0.533
1.65TrpGlu: 1.65 ± 0.507
1.375TrpPhe: 1.375 ± 0.817
1.375TrpGly: 1.375 ± 0.48
0.55TrpHis: 0.55 ± 0.27
1.375TrpIle: 1.375 ± 0.567
3.025TrpLys: 3.025 ± 0.827
1.65TrpLeu: 1.65 ± 1.036
0.55TrpMet: 0.55 ± 0.298
1.1TrpAsn: 1.1 ± 0.723
0.275TrpPro: 0.275 ± 0.149
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
1.375TrpSer: 1.375 ± 0.744
1.1TrpThr: 1.1 ± 0.28
1.375TrpVal: 1.375 ± 0.821
0.275TrpTrp: 0.275 ± 0.433
0.275TrpTyr: 0.275 ± 0.302
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.375TyrAla: 1.375 ± 1.169
1.65TyrCys: 1.65 ± 0.901
1.375TyrAsp: 1.375 ± 0.402
1.1TyrGlu: 1.1 ± 0.596
1.1TyrPhe: 1.1 ± 0.391
2.75TyrGly: 2.75 ± 1.029
1.375TyrHis: 1.375 ± 0.402
1.65TyrIle: 1.65 ± 0.31
3.3TyrLys: 3.3 ± 0.268
4.125TyrLeu: 4.125 ± 0.59
1.1TyrMet: 1.1 ± 0.725
1.925TyrAsn: 1.925 ± 0.699
0.825TyrPro: 0.825 ± 0.295
1.1TyrGln: 1.1 ± 0.876
1.925TyrArg: 1.925 ± 0.273
3.85TyrSer: 3.85 ± 0.379
0.825TyrThr: 0.825 ± 0.315
0.275TyrVal: 0.275 ± 0.302
0.275TyrTrp: 0.275 ± 0.149
1.375TyrTyr: 1.375 ± 0.457
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (3637 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski