Halovirus HHTV-1

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses

Average proteome isoelectric point is 5.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 74 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R4TM75|R4TM75_9VIRU Uncharacterized protein OS=Halovirus HHTV-1 OX=1273750 GN=12 PE=4 SV=1
MM1 pKa = 7.1ATDD4 pKa = 3.8RR5 pKa = 11.84NTYY8 pKa = 8.71PCRR11 pKa = 11.84GCGKK15 pKa = 9.38PFLEE19 pKa = 4.8DD20 pKa = 3.76GPRR23 pKa = 11.84KK24 pKa = 9.62AHH26 pKa = 6.86EE27 pKa = 4.51SSCPQAPDD35 pKa = 3.8PEE37 pKa = 4.53KK38 pKa = 11.13ADD40 pKa = 3.58ISDD43 pKa = 4.11TEE45 pKa = 4.29PPEE48 pKa = 5.62APDD51 pKa = 3.7STPEE55 pKa = 4.01PQGEE59 pKa = 4.19APEE62 pKa = 4.52EE63 pKa = 3.94PDD65 pKa = 3.2RR66 pKa = 11.84PARR69 pKa = 11.84EE70 pKa = 4.2PEE72 pKa = 4.24VQQEE76 pKa = 4.22PRR78 pKa = 11.84SPADD82 pKa = 3.32PHH84 pKa = 7.05PDD86 pKa = 3.65PEE88 pKa = 5.68PEE90 pKa = 3.95ADD92 pKa = 4.92AGCSCCGADD101 pKa = 4.9PGSLSINGMCYY112 pKa = 9.12GCEE115 pKa = 4.07LAGCDD120 pKa = 4.58PDD122 pKa = 5.76SLGCDD127 pKa = 3.58HH128 pKa = 7.19LPGGGG133 pKa = 3.27

Molecular weight: 13.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R4TGA6|R4TGA6_9VIRU Uncharacterized protein OS=Halovirus HHTV-1 OX=1273750 GN=10 PE=4 SV=1
MM1 pKa = 6.6MLKK4 pKa = 10.48RR5 pKa = 11.84ITDD8 pKa = 4.42WILGEE13 pKa = 4.11KK14 pKa = 9.01VANSEE19 pKa = 4.26TRR21 pKa = 11.84HH22 pKa = 4.53QPAWFPSTDD31 pKa = 3.53FDD33 pKa = 3.52IRR35 pKa = 11.84PFGEE39 pKa = 3.7RR40 pKa = 11.84LALFRR45 pKa = 11.84LPPYY49 pKa = 8.99KK50 pKa = 10.09PPYY53 pKa = 8.99RR54 pKa = 11.84RR55 pKa = 11.84HH56 pKa = 5.48FRR58 pKa = 11.84LKK60 pKa = 9.59FWICFRR66 pKa = 11.84QFHH69 pKa = 6.21RR70 pKa = 11.84AGFVEE75 pKa = 4.58LDD77 pKa = 3.31LDD79 pKa = 4.52EE80 pKa = 4.74RR81 pKa = 11.84TLDD84 pKa = 3.52LDD86 pKa = 4.33LYY88 pKa = 10.83RR89 pKa = 6.0

Molecular weight: 10.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

74

0

74

15566

37

1100

210.4

23.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.223 ± 0.373

0.784 ± 0.15

9.553 ± 0.316

8.422 ± 0.471

3.386 ± 0.17

8.641 ± 0.247

2.242 ± 0.215

5.139 ± 0.241

2.64 ± 0.162

6.964 ± 0.392

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.422 ± 0.159

3.559 ± 0.211

5.223 ± 0.299

4.998 ± 0.198

5.261 ± 0.287

6.238 ± 0.28

5.808 ± 0.298

6.662 ± 0.201

1.523 ± 0.135

2.313 ± 0.205
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski