Genlisea aurea

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17675 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S8DA88|S8DA88_9LAMI CASP-like protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00354 PE=3 SV=1
MM1 pKa = 7.78GSDD4 pKa = 3.17TRR6 pKa = 11.84DD7 pKa = 3.32GEE9 pKa = 4.51DD10 pKa = 3.43YY11 pKa = 10.46FVKK14 pKa = 10.56VVAGEE19 pKa = 4.13FGYY22 pKa = 10.88VLQDD26 pKa = 3.4VPHH29 pKa = 6.19LTDD32 pKa = 4.74YY33 pKa = 11.22IPDD36 pKa = 3.47LTTYY40 pKa = 9.94PNPLGSNSAYY50 pKa = 10.63SVVKK54 pKa = 10.38QYY56 pKa = 10.82FVDD59 pKa = 3.64MDD61 pKa = 4.04DD62 pKa = 4.21SVPEE66 pKa = 4.32KK67 pKa = 10.52IVLLLLLII75 pKa = 4.67

Molecular weight: 8.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S8CQP1|S8CQP1_9LAMI H/ACA ribonucleoprotein complex subunit (Fragment) OS=Genlisea aurea OX=192259 GN=M569_05695 PE=3 SV=1
RR1 pKa = 7.64RR2 pKa = 11.84ISSRR6 pKa = 11.84RR7 pKa = 11.84DD8 pKa = 2.81MSRR11 pKa = 11.84RR12 pKa = 11.84GRR14 pKa = 11.84RR15 pKa = 11.84GARR18 pKa = 11.84RR19 pKa = 11.84KK20 pKa = 9.16RR21 pKa = 11.84NRR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84GRR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84GRR34 pKa = 11.84GRR36 pKa = 11.84NRR38 pKa = 11.84SVLGSNLGNRR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84GRR52 pKa = 11.84RR53 pKa = 11.84IRR55 pKa = 11.84RR56 pKa = 11.84RR57 pKa = 11.84RR58 pKa = 11.84VEE60 pKa = 3.71FRR62 pKa = 11.84RR63 pKa = 11.84RR64 pKa = 11.84PFFRR68 pKa = 11.84NRR70 pKa = 2.93

Molecular weight: 9.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

17675

0

17675

5688215

50

5020

321.8

35.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.399 ± 0.016

1.813 ± 0.01

5.484 ± 0.012

6.51 ± 0.021

4.351 ± 0.012

6.876 ± 0.019

2.297 ± 0.008

5.314 ± 0.014

5.663 ± 0.017

9.704 ± 0.022

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.254 ± 0.008

3.96 ± 0.01

4.818 ± 0.018

3.254 ± 0.01

6.019 ± 0.016

8.747 ± 0.021

4.53 ± 0.01

6.833 ± 0.014

1.326 ± 0.007

2.847 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski