Macaca fascicularis papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Betapapillomavirus; Betapapillomavirus 6

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F8QPP9|F8QPP9_9PAPI Minor capsid protein L2 OS=Macaca fascicularis papillomavirus 2 OX=915424 GN=L2 PE=3 SV=1
MM1 pKa = 7.32LHH3 pKa = 6.87LGLMQRR9 pKa = 11.84DD10 pKa = 3.91MVKK13 pKa = 10.64LDD15 pKa = 3.66FGRR18 pKa = 11.84LSIIRR23 pKa = 11.84TLSLLLSPVQRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84DD37 pKa = 3.62RR38 pKa = 11.84DD39 pKa = 3.69HH40 pKa = 6.94QPPPTPTPQKK50 pKa = 10.94DD51 pKa = 3.31PNTPLKK57 pKa = 9.19WYY59 pKa = 10.3QSIRR63 pKa = 11.84PPPLPPQPPLPPLNSEE79 pKa = 4.21PEE81 pKa = 4.33GTGEE85 pKa = 3.93KK86 pKa = 10.43PPVQEE91 pKa = 4.98EE92 pKa = 4.38EE93 pKa = 4.48NEE95 pKa = 3.93DD96 pKa = 3.48TRR98 pKa = 11.84PSKK101 pKa = 9.47KK102 pKa = 8.73TKK104 pKa = 10.28EE105 pKa = 4.34NGDD108 pKa = 3.55HH109 pKa = 6.43TSGDD113 pKa = 3.9GEE115 pKa = 4.54KK116 pKa = 10.64EE117 pKa = 4.18GGDD120 pKa = 3.95PDD122 pKa = 4.94PGPVPHH128 pKa = 7.82PDD130 pKa = 4.02PDD132 pKa = 4.71PDD134 pKa = 4.76PDD136 pKa = 4.38PEE138 pKa = 4.78PEE140 pKa = 4.65PEE142 pKa = 4.87PDD144 pKa = 4.7PNPQPQPIPAPDD156 pKa = 4.7PDD158 pKa = 4.69LDD160 pKa = 4.46PGQVASFLEE169 pKa = 5.05GVASYY174 pKa = 9.04LHH176 pKa = 6.4RR177 pKa = 11.84WEE179 pKa = 4.56VGYY182 pKa = 9.67QQLVKK187 pKa = 10.47DD188 pKa = 4.08IKK190 pKa = 10.91EE191 pKa = 4.24DD192 pKa = 4.16LDD194 pKa = 4.21NYY196 pKa = 8.24WLKK199 pKa = 11.0LQTPQQ204 pKa = 4.22

Molecular weight: 22.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F8QPP8|F8QPP8_9PAPI E4 OS=Macaca fascicularis papillomavirus 2 OX=915424 GN=E4 PE=4 SV=1
MM1 pKa = 7.02EE2 pKa = 4.44TLSEE6 pKa = 4.19RR7 pKa = 11.84FHH9 pKa = 7.09ALQEE13 pKa = 4.13KK14 pKa = 10.35LMEE17 pKa = 4.88IYY19 pKa = 10.51EE20 pKa = 4.34SGKK23 pKa = 8.49NTIAAQIEE31 pKa = 4.3HH32 pKa = 6.22WQLLRR37 pKa = 11.84QEE39 pKa = 4.16QVLLHH44 pKa = 6.15FARR47 pKa = 11.84KK48 pKa = 9.64RR49 pKa = 11.84GVTRR53 pKa = 11.84LGYY56 pKa = 10.31QPVPNLAITEE66 pKa = 4.17QKK68 pKa = 10.94AKK70 pKa = 10.68DD71 pKa = 3.99AIGMGLLLQSLEE83 pKa = 3.82KK84 pKa = 10.53SPYY87 pKa = 10.15GGEE90 pKa = 3.9SWSLVDD96 pKa = 4.03TSLEE100 pKa = 4.27TFRR103 pKa = 11.84SPPQQCFKK111 pKa = 11.06KK112 pKa = 10.31GGQEE116 pKa = 3.79VEE118 pKa = 4.09VRR120 pKa = 11.84FDD122 pKa = 3.81GDD124 pKa = 3.54PEE126 pKa = 5.48NIMLYY131 pKa = 9.73TSWQHH136 pKa = 7.26IYY138 pKa = 10.37FQDD141 pKa = 4.85SHH143 pKa = 8.03DD144 pKa = 3.76SWQKK148 pKa = 9.55VQGQVDD154 pKa = 4.2YY155 pKa = 11.62DD156 pKa = 3.56GLFYY160 pKa = 10.79FDD162 pKa = 4.98GPVKK166 pKa = 10.49VYY168 pKa = 10.68YY169 pKa = 9.34VTFGTDD175 pKa = 2.57AKK177 pKa = 10.61RR178 pKa = 11.84YY179 pKa = 8.62GKK181 pKa = 8.54TGLWEE186 pKa = 3.8VVYY189 pKa = 11.08NKK191 pKa = 10.4DD192 pKa = 3.68IIFAPVTSSTPEE204 pKa = 4.17GQGSPAPADD213 pKa = 3.62SNTAEE218 pKa = 4.78GSQHH222 pKa = 4.79PTEE225 pKa = 4.42VVSVDD230 pKa = 3.3SATTSAPAATSATAKK245 pKa = 9.77QRR247 pKa = 11.84ARR249 pKa = 11.84RR250 pKa = 11.84YY251 pKa = 8.85GRR253 pKa = 11.84KK254 pKa = 9.39ASSPGGGEE262 pKa = 3.61RR263 pKa = 11.84GYY265 pKa = 11.34SPLKK269 pKa = 8.94EE270 pKa = 4.21NQRR273 pKa = 11.84EE274 pKa = 4.11RR275 pKa = 11.84RR276 pKa = 11.84PHH278 pKa = 4.85KK279 pKa = 9.9RR280 pKa = 11.84GRR282 pKa = 11.84GEE284 pKa = 3.5RR285 pKa = 11.84GGRR288 pKa = 11.84SRR290 pKa = 11.84SRR292 pKa = 11.84SRR294 pKa = 11.84ATSRR298 pKa = 11.84SRR300 pKa = 11.84SRR302 pKa = 11.84SRR304 pKa = 11.84SRR306 pKa = 11.84TRR308 pKa = 11.84TRR310 pKa = 11.84ARR312 pKa = 11.84PQSATTTHH320 pKa = 6.9PCTRR324 pKa = 11.84SRR326 pKa = 11.84SRR328 pKa = 11.84SRR330 pKa = 11.84PGCVLSGGGGVLPSQVGSRR349 pKa = 11.84LSTVGQGHH357 pKa = 5.81QGRR360 pKa = 11.84LGQLLAEE367 pKa = 4.56ATDD370 pKa = 3.88PPVILLRR377 pKa = 11.84GDD379 pKa = 3.61PNAVKK384 pKa = 10.59CFRR387 pKa = 11.84FRR389 pKa = 11.84AKK391 pKa = 10.45DD392 pKa = 3.36KK393 pKa = 11.24YY394 pKa = 9.79RR395 pKa = 11.84GLYY398 pKa = 9.2TRR400 pKa = 11.84MSTTWSWVGADD411 pKa = 3.24NNDD414 pKa = 3.91RR415 pKa = 11.84IGRR418 pKa = 11.84ARR420 pKa = 11.84MLVAFSSYY428 pKa = 6.95EE429 pKa = 3.81QRR431 pKa = 11.84HH432 pKa = 5.89LFLKK436 pKa = 9.87HH437 pKa = 6.01LKK439 pKa = 9.61VPKK442 pKa = 10.66GMDD445 pKa = 2.83WSLGQFDD452 pKa = 4.27SLL454 pKa = 4.55

Molecular weight: 50.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2558

108

614

365.4

40.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.059 ± 0.691

1.798 ± 0.587

6.568 ± 0.672

6.177 ± 0.953

4.027 ± 0.43

7.232 ± 0.759

1.916 ± 0.226

4.183 ± 0.419

3.987 ± 0.568

8.913 ± 0.512

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.446 ± 0.297

3.675 ± 0.792

6.88 ± 1.344

5.238 ± 0.274

7.271 ± 0.645

7.545 ± 0.799

6.138 ± 0.577

6.333 ± 0.554

1.407 ± 0.35

3.206 ± 0.359
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski