Pseudoscardovia suis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Bifidobacteriales; Bifidobacteriaceae; Pseudoscardovia

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1732 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A261EXE0|A0A261EXE0_9BIFI Phosphomethylpyrimidine synthase OS=Pseudoscardovia suis OX=987063 GN=thiC PE=3 SV=1
MM1 pKa = 7.66ALNTTLLKK9 pKa = 10.6RR10 pKa = 11.84LAALGCACALSLGASACGSKK30 pKa = 9.96QASTTSSPTASTSFTHH46 pKa = 6.4MDD48 pKa = 4.85GITATGNLGEE58 pKa = 4.21QPTVSFDD65 pKa = 3.37SLPYY69 pKa = 8.5TVHH72 pKa = 6.1NNSYY76 pKa = 11.09AILQTGDD83 pKa = 3.24GDD85 pKa = 4.29TVQDD89 pKa = 3.72GQRR92 pKa = 11.84ICLQNMFVNTDD103 pKa = 3.61DD104 pKa = 4.74GSVLSSSWGSDD115 pKa = 3.02PVDD118 pKa = 3.93CATITQSQTPSDD130 pKa = 4.32YY131 pKa = 11.24YY132 pKa = 11.54GLLVGQKK139 pKa = 8.27VHH141 pKa = 4.7TTIAIGYY148 pKa = 8.46NLDD151 pKa = 3.71EE152 pKa = 4.68TSSSSSDD159 pKa = 3.22SAANSAATATNSAQRR174 pKa = 11.84LASASASSTGLSSLAALNDD193 pKa = 3.59FTATVVDD200 pKa = 5.17DD201 pKa = 4.63EE202 pKa = 4.91SQSSSASDD210 pKa = 3.35SASASSSDD218 pKa = 3.67SASSDD223 pKa = 3.4STSSDD228 pKa = 3.31STSSSSSDD236 pKa = 3.19STSSTNVNSHH246 pKa = 5.59YY247 pKa = 10.8LWVFTIMSATQPATRR262 pKa = 11.84AQGTEE267 pKa = 4.08VTDD270 pKa = 4.23LPSGLPTVTRR280 pKa = 11.84DD281 pKa = 3.15ASTGQPSIDD290 pKa = 3.03VSTYY294 pKa = 10.4SGSTTSLVSQTLIQGTGATVQQGDD318 pKa = 4.39TLDD321 pKa = 3.42VMYY324 pKa = 10.71SGWLTDD330 pKa = 3.37GTQFDD335 pKa = 5.21SNWSNGTSTQLTMSEE350 pKa = 4.1DD351 pKa = 3.73SVIKK355 pKa = 10.7GFMQGLVGQKK365 pKa = 9.93VGSQVLLIIPPDD377 pKa = 3.54LGYY380 pKa = 11.06GSSAQGSIPANSTLIFVVDD399 pKa = 3.42ILYY402 pKa = 10.81SSSSKK407 pKa = 11.08

Molecular weight: 41.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A261F4G4|A0A261F4G4_9BIFI SNARE associated Golgi protein OS=Pseudoscardovia suis OX=987063 GN=PSSU_0132 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84HH13 pKa = 4.83MKK15 pKa = 9.27HH16 pKa = 5.56GFRR19 pKa = 11.84VRR21 pKa = 11.84MRR23 pKa = 11.84TRR25 pKa = 11.84SGRR28 pKa = 11.84ATINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 6.41TLSAA44 pKa = 4.15

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1732

0

1732

640469

29

3158

369.8

40.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.577 ± 0.085

1.06 ± 0.023

6.869 ± 0.064

5.199 ± 0.052

3.12 ± 0.034

7.976 ± 0.052

2.311 ± 0.031

4.89 ± 0.04

3.558 ± 0.054

8.19 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.509 ± 0.026

3.185 ± 0.036

4.775 ± 0.045

3.803 ± 0.043

6.028 ± 0.071

6.876 ± 0.081

6.475 ± 0.072

7.66 ± 0.055

1.346 ± 0.02

2.592 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski