Aurantimonas sp. Leaf443

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Aurantimonadaceae; Aurantimonas; unclassified Aurantimonas

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3439 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q6F8A7|A0A0Q6F8A7_9RHIZ Cytochrome o ubiquinol oxidase subunit I OS=Aurantimonas sp. Leaf443 OX=1736378 GN=ASG48_17435 PE=3 SV=1
MM1 pKa = 7.41KK2 pKa = 10.47RR3 pKa = 11.84LALLLASAAFVTPALAADD21 pKa = 4.54VIYY24 pKa = 7.59DD25 pKa = 3.9TPVAPAAPMEE35 pKa = 4.31IAPVTEE41 pKa = 4.29TNTWTGLYY49 pKa = 9.84IGGQAGVAFGQDD61 pKa = 3.2SNDD64 pKa = 2.9IRR66 pKa = 11.84FDD68 pKa = 3.67PEE70 pKa = 3.65NNGAFGEE77 pKa = 4.76TIFEE81 pKa = 4.38NDD83 pKa = 3.18DD84 pKa = 3.49TNAGFVGGGHH94 pKa = 6.88IGYY97 pKa = 9.89DD98 pKa = 3.44YY99 pKa = 11.4QFGNNLVVGAVADD112 pKa = 4.13LNYY115 pKa = 10.06IDD117 pKa = 5.69AEE119 pKa = 4.32TSRR122 pKa = 11.84SYY124 pKa = 11.25SIDD127 pKa = 3.0GNRR130 pKa = 11.84FGVSEE135 pKa = 4.26DD136 pKa = 3.21LDD138 pKa = 3.87YY139 pKa = 11.4FGTVRR144 pKa = 11.84GRR146 pKa = 11.84LGYY149 pKa = 11.2AMDD152 pKa = 5.12SILVYY157 pKa = 10.79GSGGLAYY164 pKa = 10.35SGYY167 pKa = 10.56NRR169 pKa = 11.84DD170 pKa = 3.11NSFPSVPTNSLAGYY184 pKa = 6.41TFKK187 pKa = 11.12EE188 pKa = 4.59DD189 pKa = 3.61GDD191 pKa = 4.35DD192 pKa = 3.6VDD194 pKa = 3.82VGYY197 pKa = 10.86SVGGGIDD204 pKa = 3.48VMATRR209 pKa = 11.84NISFGVEE216 pKa = 3.57YY217 pKa = 10.34LYY219 pKa = 11.18TNLGKK224 pKa = 10.02NDD226 pKa = 3.67YY227 pKa = 10.69SVEE230 pKa = 4.0ATNGSNTIDD239 pKa = 3.49LTSTSKK245 pKa = 11.3DD246 pKa = 3.22DD247 pKa = 5.04LDD249 pKa = 3.78FHH251 pKa = 6.88TIFAKK256 pKa = 10.43ASYY259 pKa = 10.27RR260 pKa = 11.84FNN262 pKa = 3.56

Molecular weight: 27.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Q6F141|A0A0Q6F141_9RHIZ GTPase HflX OS=Aurantimonas sp. Leaf443 OX=1736378 GN=hflX PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84AVIASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.73GRR39 pKa = 11.84KK40 pKa = 8.92RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3439

0

3439

1115558

41

3002

324.4

34.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.026 ± 0.067

0.766 ± 0.012

5.569 ± 0.03

6.016 ± 0.036

3.732 ± 0.026

9.043 ± 0.044

1.841 ± 0.018

4.589 ± 0.032

2.621 ± 0.035

10.522 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.308 ± 0.021

2.071 ± 0.02

5.36 ± 0.032

2.638 ± 0.023

7.867 ± 0.046

5.166 ± 0.031

5.164 ± 0.03

7.607 ± 0.035

1.109 ± 0.016

1.985 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski