Prevotella sp. oral taxon 473 str. F0040

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella; Alloprevotella sp. oral taxon 473

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2316 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L1MHT0|L1MHT0_9BACT Lipocalin-like domain-containing protein OS=Prevotella sp. oral taxon 473 str. F0040 OX=1035197 GN=HMPREF9999_01301 PE=4 SV=1
MM1 pKa = 7.6LLASCAVRR9 pKa = 11.84GKK11 pKa = 10.72YY12 pKa = 10.1SEE14 pKa = 5.5DD15 pKa = 3.44DD16 pKa = 3.78AEE18 pKa = 4.66TADD21 pKa = 3.9SAYY24 pKa = 9.2DD25 pKa = 3.61TSDD28 pKa = 3.34DD29 pKa = 3.98SQGNNHH35 pKa = 6.68DD36 pKa = 4.36AEE38 pKa = 5.22DD39 pKa = 4.02NFSGASSRR47 pKa = 11.84HH48 pKa = 5.29MDD50 pKa = 3.36SEE52 pKa = 4.59DD53 pKa = 3.68NEE55 pKa = 4.73GSSTMMSDD63 pKa = 3.0RR64 pKa = 11.84LSPEE68 pKa = 3.83DD69 pKa = 3.34EE70 pKa = 4.57AYY72 pKa = 9.85EE73 pKa = 4.38AGHH76 pKa = 5.58SQGYY80 pKa = 10.5DD81 pKa = 3.31DD82 pKa = 5.34GSADD86 pKa = 3.66AGTGSDD92 pKa = 3.62HH93 pKa = 5.89GTSFDD98 pKa = 4.56EE99 pKa = 4.56DD100 pKa = 2.91NKK102 pKa = 9.99YY103 pKa = 10.0QGKK106 pKa = 9.24AAEE109 pKa = 4.27QYY111 pKa = 10.69EE112 pKa = 4.27EE113 pKa = 5.32GYY115 pKa = 9.86NAGYY119 pKa = 10.74NEE121 pKa = 4.38GFNEE125 pKa = 4.14LTRR128 pKa = 4.63

Molecular weight: 13.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L1MAM7|L1MAM7_9BACT N-acetylglucosamine-6-phosphate deacetylase OS=Prevotella sp. oral taxon 473 str. F0040 OX=1035197 GN=HMPREF9999_02052 PE=3 SV=1
MM1 pKa = 7.34SVLRR5 pKa = 11.84FTARR9 pKa = 11.84LCLQRR14 pKa = 11.84YY15 pKa = 9.74DD16 pKa = 4.0EE17 pKa = 5.1FVTLQSSRR25 pKa = 11.84EE26 pKa = 3.86QQGNIGNFKK35 pKa = 10.62EE36 pKa = 4.32KK37 pKa = 9.15LTHH40 pKa = 7.16FIGSRR45 pKa = 11.84LRR47 pKa = 11.84ILSLFSSFAVCLAQRR62 pKa = 3.89

Molecular weight: 7.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2316

0

2316

734294

38

2495

317.1

35.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.248 ± 0.052

1.119 ± 0.021

5.242 ± 0.036

6.192 ± 0.054

4.576 ± 0.036

6.629 ± 0.049

2.374 ± 0.03

5.795 ± 0.049

5.58 ± 0.047

9.759 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.487 ± 0.025

4.562 ± 0.048

3.98 ± 0.032

4.222 ± 0.033

5.358 ± 0.04

6.307 ± 0.044

5.792 ± 0.04

6.682 ± 0.044

1.244 ± 0.019

3.852 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski