Corynebacterium sp. 2039

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; unclassified Corynebacterium

Average proteome isoelectric point is 5.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2838 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6B8VY52|A0A6B8VY52_9CORY Yqey-like protein OS=Corynebacterium sp. 2039 OX=2675219 GN=COCCU_01520 PE=4 SV=1
MM1 pKa = 7.73IPIRR5 pKa = 11.84KK6 pKa = 7.45FTLTAFAILSLGLAGCSASTEE27 pKa = 4.2DD28 pKa = 5.67DD29 pKa = 3.66SATTADD35 pKa = 3.69TAASLSTPEE44 pKa = 4.73SEE46 pKa = 4.48TSSEE50 pKa = 4.04STTVVTTTEE59 pKa = 4.01EE60 pKa = 4.39DD61 pKa = 3.58PTPEE65 pKa = 3.94TTVEE69 pKa = 4.28EE70 pKa = 4.37EE71 pKa = 4.26SSPNPSIDD79 pKa = 3.13ATADD83 pKa = 3.33AGPTLVDD90 pKa = 3.43PARR93 pKa = 11.84FSMDD97 pKa = 2.66GPYY100 pKa = 10.69VFDD103 pKa = 4.04YY104 pKa = 8.85ATQSGEE110 pKa = 4.08TGTCLLTPDD119 pKa = 4.36GATCTGVPAADD130 pKa = 3.91VPDD133 pKa = 3.33ITYY136 pKa = 10.86APFAGQRR143 pKa = 11.84PGAVSASMGGIHH155 pKa = 5.45YY156 pKa = 7.5TILEE160 pKa = 4.39GVPPAPAQLQPGEE173 pKa = 4.37KK174 pKa = 9.81LVVDD178 pKa = 4.24ATTCEE183 pKa = 4.14VSQTRR188 pKa = 11.84DD189 pKa = 3.43VTCVSGDD196 pKa = 3.27TSFTVSGADD205 pKa = 3.57RR206 pKa = 11.84SITTGG211 pKa = 3.01

Molecular weight: 21.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6B8W6F0|A0A6B8W6F0_9CORY Uncharacterized protein OS=Corynebacterium sp. 2039 OX=2675219 GN=COCCU_02610 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.39KK16 pKa = 9.04HH17 pKa = 5.39RR18 pKa = 11.84KK19 pKa = 5.37MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2838

0

2838

925458

29

3028

326.1

35.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.263 ± 0.054

0.637 ± 0.011

5.53 ± 0.038

6.855 ± 0.054

3.301 ± 0.031

8.572 ± 0.043

2.219 ± 0.022

5.13 ± 0.032

2.777 ± 0.032

10.337 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.204 ± 0.019

2.77 ± 0.026

5.364 ± 0.038

3.468 ± 0.026

6.419 ± 0.046

5.874 ± 0.029

5.904 ± 0.035

7.804 ± 0.041

1.473 ± 0.02

2.1 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski