Geomonas soli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5762 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N7ITE5|A0A3N7ITE5_9BURK Response regulator OS=Geomonas soli OX=2496871 GN=DZC73_24195 PE=4 SV=1
MM1 pKa = 7.6KK2 pKa = 10.31LLSQLAIGMAIVFTALHH19 pKa = 6.44ANADD23 pKa = 3.88GGTQAGSTFKK33 pKa = 10.69IFTLSITPDD42 pKa = 3.22TDD44 pKa = 3.99DD45 pKa = 4.51QDD47 pKa = 5.83EE48 pKa = 4.19DD49 pKa = 4.21VQWYY53 pKa = 8.89DD54 pKa = 4.94CSGLCQGAA62 pKa = 3.22

Molecular weight: 6.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N7HRI8|A0A3N7HRI8_9BURK GNAT family N-acetyltransferase OS=Geomonas soli OX=2496871 GN=DZC73_18685 PE=4 SV=1
MM1 pKa = 7.33KK2 pKa = 9.38RR3 pKa = 11.84TYY5 pKa = 9.71QASKK9 pKa = 9.04VRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.65GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5762

0

5762

1976155

24

7685

343.0

37.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.614 ± 0.042

0.912 ± 0.011

5.515 ± 0.023

5.222 ± 0.031

3.497 ± 0.018

8.178 ± 0.034

2.353 ± 0.02

4.154 ± 0.021

3.357 ± 0.035

10.346 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.499 ± 0.018

2.645 ± 0.026

5.21 ± 0.027

3.941 ± 0.024

6.978 ± 0.04

5.811 ± 0.027

5.337 ± 0.053

7.798 ± 0.027

1.505 ± 0.017

2.128 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski