Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_470

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.54AlaAla: 5.54 ± 3.62
0.693AlaCys: 0.693 ± 0.693
7.618AlaAsp: 7.618 ± 1.913
4.155AlaGlu: 4.155 ± 2.348
4.848AlaPhe: 4.848 ± 1.731
2.77AlaGly: 2.77 ± 1.013
0.0AlaHis: 0.0 ± 0.0
4.155AlaIle: 4.155 ± 2.255
1.385AlaLys: 1.385 ± 1.176
3.463AlaLeu: 3.463 ± 1.55
2.078AlaMet: 2.078 ± 1.509
5.54AlaAsn: 5.54 ± 1.336
5.54AlaPro: 5.54 ± 0.87
5.54AlaGln: 5.54 ± 1.743
2.77AlaArg: 2.77 ± 0.758
5.54AlaSer: 5.54 ± 2.728
2.078AlaThr: 2.078 ± 1.357
4.155AlaVal: 4.155 ± 2.521
2.77AlaTrp: 2.77 ± 0.778
2.77AlaTyr: 2.77 ± 1.584
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.693CysCys: 0.693 ± 0.693
1.385CysAsp: 1.385 ± 0.746
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.693CysGly: 0.693 ± 0.693
0.0CysHis: 0.0 ± 0.0
0.693CysIle: 0.693 ± 0.822
0.693CysLys: 0.693 ± 0.497
1.385CysLeu: 1.385 ± 0.993
0.693CysMet: 0.693 ± 1.261
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.693CysGln: 0.693 ± 0.497
0.0CysArg: 0.0 ± 0.0
0.693CysSer: 0.693 ± 0.693
0.693CysThr: 0.693 ± 0.497
2.078CysVal: 2.078 ± 1.178
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.54AspAla: 5.54 ± 1.401
0.693AspCys: 0.693 ± 0.822
2.77AspAsp: 2.77 ± 1.004
3.463AspGlu: 3.463 ± 1.668
3.463AspPhe: 3.463 ± 1.664
3.463AspGly: 3.463 ± 1.054
1.385AspHis: 1.385 ± 0.993
3.463AspIle: 3.463 ± 2.207
3.463AspLys: 3.463 ± 0.924
9.003AspLeu: 9.003 ± 4.716
1.385AspMet: 1.385 ± 0.956
3.463AspAsn: 3.463 ± 1.668
0.693AspPro: 0.693 ± 0.497
2.77AspGln: 2.77 ± 1.492
1.385AspArg: 1.385 ± 0.993
4.155AspSer: 4.155 ± 2.175
4.155AspThr: 4.155 ± 1.887
4.848AspVal: 4.848 ± 2.305
0.693AspTrp: 0.693 ± 0.497
4.155AspTyr: 4.155 ± 1.506
0.0AspXaa: 0.0 ± 0.0
Glu
3.463GluAla: 3.463 ± 1.149
0.0GluCys: 0.0 ± 0.0
2.078GluAsp: 2.078 ± 1.061
2.77GluGlu: 2.77 ± 0.627
1.385GluPhe: 1.385 ± 0.856
0.693GluGly: 0.693 ± 0.497
2.078GluHis: 2.078 ± 1.49
2.77GluIle: 2.77 ± 1.077
2.77GluLys: 2.77 ± 1.013
6.233GluLeu: 6.233 ± 2.459
1.385GluMet: 1.385 ± 0.9
2.078GluAsn: 2.078 ± 1.49
0.693GluPro: 0.693 ± 0.693
3.463GluGln: 3.463 ± 0.392
4.155GluArg: 4.155 ± 1.958
3.463GluSer: 3.463 ± 1.339
3.463GluThr: 3.463 ± 1.084
4.155GluVal: 4.155 ± 2.086
2.078GluTrp: 2.078 ± 1.294
2.77GluTyr: 2.77 ± 0.627
0.0GluXaa: 0.0 ± 0.0
Phe
4.155PheAla: 4.155 ± 1.803
0.693PheCys: 0.693 ± 0.497
4.155PheAsp: 4.155 ± 2.78
0.693PheGlu: 0.693 ± 0.693
0.693PhePhe: 0.693 ± 0.497
3.463PheGly: 3.463 ± 1.778
0.0PheHis: 0.0 ± 0.0
2.77PheIle: 2.77 ± 1.212
1.385PheLys: 1.385 ± 0.557
1.385PheLeu: 1.385 ± 1.247
1.385PheMet: 1.385 ± 0.574
3.463PheAsn: 3.463 ± 0.973
0.693PhePro: 0.693 ± 0.693
0.693PheGln: 0.693 ± 0.693
2.77PheArg: 2.77 ± 1.341
8.31PheSer: 8.31 ± 3.093
2.078PheThr: 2.078 ± 1.227
2.77PheVal: 2.77 ± 2.495
2.078PheTrp: 2.078 ± 0.604
1.385PheTyr: 1.385 ± 1.387
0.0PheXaa: 0.0 ± 0.0
Gly
2.078GlyAla: 2.078 ± 1.032
0.0GlyCys: 0.0 ± 0.0
4.848GlyAsp: 4.848 ± 2.284
5.54GlyGlu: 5.54 ± 1.314
4.848GlyPhe: 4.848 ± 2.918
2.77GlyGly: 2.77 ± 1.311
0.0GlyHis: 0.0 ± 0.0
2.77GlyIle: 2.77 ± 1.449
2.77GlyLys: 2.77 ± 1.258
11.773GlyLeu: 11.773 ± 2.848
2.078GlyMet: 2.078 ± 1.49
4.848GlyAsn: 4.848 ± 1.075
1.385GlyPro: 1.385 ± 0.991
0.693GlyGln: 0.693 ± 0.588
0.693GlyArg: 0.693 ± 0.822
10.388GlySer: 10.388 ± 3.281
3.463GlyThr: 3.463 ± 1.406
4.155GlyVal: 4.155 ± 1.4
0.693GlyTrp: 0.693 ± 0.497
3.463GlyTyr: 3.463 ± 1.467
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.693HisCys: 0.693 ± 0.693
1.385HisAsp: 1.385 ± 0.746
1.385HisGlu: 1.385 ± 0.991
1.385HisPhe: 1.385 ± 0.629
1.385HisGly: 1.385 ± 0.993
0.693HisHis: 0.693 ± 0.822
0.693HisIle: 0.693 ± 0.822
0.0HisLys: 0.0 ± 0.0
0.693HisLeu: 0.693 ± 0.497
0.0HisMet: 0.0 ± 0.0
1.385HisAsn: 1.385 ± 0.993
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.693HisArg: 0.693 ± 0.693
0.693HisSer: 0.693 ± 0.693
1.385HisThr: 1.385 ± 0.993
0.0HisVal: 0.0 ± 0.0
0.693HisTrp: 0.693 ± 0.497
0.693HisTyr: 0.693 ± 0.693
0.0HisXaa: 0.0 ± 0.0
Ile
4.155IleAla: 4.155 ± 2.961
0.0IleCys: 0.0 ± 0.0
4.155IleAsp: 4.155 ± 2.606
3.463IleGlu: 3.463 ± 1.761
0.693IlePhe: 0.693 ± 0.497
4.848IleGly: 4.848 ± 1.028
1.385IleHis: 1.385 ± 0.746
2.77IleIle: 2.77 ± 1.437
4.155IleLys: 4.155 ± 2.081
0.0IleLeu: 0.0 ± 0.0
0.693IleMet: 0.693 ± 0.693
4.848IleAsn: 4.848 ± 2.284
2.078IlePro: 2.078 ± 1.49
3.463IleGln: 3.463 ± 1.614
0.693IleArg: 0.693 ± 0.497
4.848IleSer: 4.848 ± 2.692
2.078IleThr: 2.078 ± 1.443
3.463IleVal: 3.463 ± 0.392
0.693IleTrp: 0.693 ± 0.497
3.463IleTyr: 3.463 ± 2.325
0.0IleXaa: 0.0 ± 0.0
Lys
6.233LysAla: 6.233 ± 2.687
0.693LysCys: 0.693 ± 0.497
4.155LysAsp: 4.155 ± 1.105
1.385LysGlu: 1.385 ± 0.856
0.693LysPhe: 0.693 ± 0.693
2.078LysGly: 2.078 ± 0.604
1.385LysHis: 1.385 ± 0.991
2.77LysIle: 2.77 ± 1.113
3.463LysLys: 3.463 ± 1.897
1.385LysLeu: 1.385 ± 0.629
1.385LysMet: 1.385 ± 1.197
2.77LysAsn: 2.77 ± 1.517
1.385LysPro: 1.385 ± 0.557
1.385LysGln: 1.385 ± 0.856
3.463LysArg: 3.463 ± 1.668
4.848LysSer: 4.848 ± 2.174
5.54LysThr: 5.54 ± 1.83
2.078LysVal: 2.078 ± 2.459
0.0LysTrp: 0.0 ± 0.0
2.77LysTyr: 2.77 ± 1.175
0.0LysXaa: 0.0 ± 0.0
Leu
5.54LeuAla: 5.54 ± 1.629
1.385LeuCys: 1.385 ± 1.247
4.848LeuAsp: 4.848 ± 2.715
3.463LeuGlu: 3.463 ± 1.823
2.77LeuPhe: 2.77 ± 1.477
9.003LeuGly: 9.003 ± 2.631
1.385LeuHis: 1.385 ± 0.746
2.77LeuIle: 2.77 ± 1.723
3.463LeuLys: 3.463 ± 1.833
4.155LeuLeu: 4.155 ± 1.752
4.155LeuMet: 4.155 ± 0.852
8.31LeuAsn: 8.31 ± 3.021
6.925LeuPro: 6.925 ± 2.108
2.77LeuGln: 2.77 ± 1.013
2.078LeuArg: 2.078 ± 1.227
8.31LeuSer: 8.31 ± 3.67
3.463LeuThr: 3.463 ± 1.467
2.078LeuVal: 2.078 ± 1.227
0.693LeuTrp: 0.693 ± 0.693
4.155LeuTyr: 4.155 ± 1.48
0.0LeuXaa: 0.0 ± 0.0
Met
2.078MetAla: 2.078 ± 1.509
0.0MetCys: 0.0 ± 0.0
1.385MetAsp: 1.385 ± 0.629
0.693MetGlu: 0.693 ± 0.588
0.693MetPhe: 0.693 ± 0.497
2.77MetGly: 2.77 ± 1.306
0.693MetHis: 0.693 ± 0.693
1.385MetIle: 1.385 ± 1.7
0.693MetLys: 0.693 ± 1.261
2.77MetLeu: 2.77 ± 1.013
1.385MetMet: 1.385 ± 1.247
1.385MetAsn: 1.385 ± 0.629
1.385MetPro: 1.385 ± 0.993
0.693MetGln: 0.693 ± 0.588
0.693MetArg: 0.693 ± 0.497
2.77MetSer: 2.77 ± 1.861
1.385MetThr: 1.385 ± 0.746
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.693MetTyr: 0.693 ± 0.822
0.0MetXaa: 0.0 ± 0.0
Asn
4.848AsnAla: 4.848 ± 2.005
0.0AsnCys: 0.0 ± 0.0
4.155AsnAsp: 4.155 ± 1.07
3.463AsnGlu: 3.463 ± 2.374
1.385AsnPhe: 1.385 ± 1.247
4.155AsnGly: 4.155 ± 0.815
0.0AsnHis: 0.0 ± 0.0
6.925AsnIle: 6.925 ± 0.957
4.848AsnLys: 4.848 ± 1.735
6.233AsnLeu: 6.233 ± 2.823
1.385AsnMet: 1.385 ± 0.92
2.77AsnAsn: 2.77 ± 0.627
4.155AsnPro: 4.155 ± 1.389
2.078AsnGln: 2.078 ± 0.965
2.77AsnArg: 2.77 ± 1.341
7.618AsnSer: 7.618 ± 2.07
3.463AsnThr: 3.463 ± 0.973
2.77AsnVal: 2.77 ± 1.306
0.693AsnTrp: 0.693 ± 0.693
1.385AsnTyr: 1.385 ± 0.856
0.0AsnXaa: 0.0 ± 0.0
Pro
1.385ProAla: 1.385 ± 0.993
0.0ProCys: 0.0 ± 0.0
2.078ProAsp: 2.078 ± 1.227
2.078ProGlu: 2.078 ± 0.604
2.078ProPhe: 2.078 ± 1.42
2.078ProGly: 2.078 ± 1.42
0.693ProHis: 0.693 ± 0.693
2.078ProIle: 2.078 ± 0.716
0.693ProLys: 0.693 ± 0.588
4.848ProLeu: 4.848 ± 1.956
2.77ProMet: 2.77 ± 0.758
2.078ProAsn: 2.078 ± 0.729
0.693ProPro: 0.693 ± 0.497
2.77ProGln: 2.77 ± 1.258
0.0ProArg: 0.0 ± 0.0
4.848ProSer: 4.848 ± 1.028
0.693ProThr: 0.693 ± 0.497
7.618ProVal: 7.618 ± 1.761
0.0ProTrp: 0.0 ± 0.0
0.693ProTyr: 0.693 ± 0.497
0.0ProXaa: 0.0 ± 0.0
Gln
4.155GlnAla: 4.155 ± 2.128
0.0GlnCys: 0.0 ± 0.0
1.385GlnAsp: 1.385 ± 0.629
2.078GlnGlu: 2.078 ± 0.716
2.078GlnPhe: 2.078 ± 1.579
0.693GlnGly: 0.693 ± 0.497
0.0GlnHis: 0.0 ± 0.0
1.385GlnIle: 1.385 ± 0.746
4.155GlnLys: 4.155 ± 0.651
3.463GlnLeu: 3.463 ± 0.932
0.0GlnMet: 0.0 ± 0.0
0.693GlnAsn: 0.693 ± 0.497
1.385GlnPro: 1.385 ± 0.993
2.77GlnGln: 2.77 ± 2.351
3.463GlnArg: 3.463 ± 0.984
4.155GlnSer: 4.155 ± 0.651
0.693GlnThr: 0.693 ± 0.588
2.77GlnVal: 2.77 ± 0.7
1.385GlnTrp: 1.385 ± 1.643
2.078GlnTyr: 2.078 ± 1.227
0.0GlnXaa: 0.0 ± 0.0
Arg
2.77ArgAla: 2.77 ± 0.778
0.0ArgCys: 0.0 ± 0.0
2.77ArgAsp: 2.77 ± 0.758
2.078ArgGlu: 2.078 ± 1.061
2.77ArgPhe: 2.77 ± 1.987
3.463ArgGly: 3.463 ± 2.065
0.0ArgHis: 0.0 ± 0.0
1.385ArgIle: 1.385 ± 0.746
2.77ArgLys: 2.77 ± 1.212
4.155ArgLeu: 4.155 ± 1.793
0.693ArgMet: 0.693 ± 0.588
1.385ArgAsn: 1.385 ± 0.629
2.078ArgPro: 2.078 ± 1.227
1.385ArgGln: 1.385 ± 0.746
1.385ArgArg: 1.385 ± 0.557
2.078ArgSer: 2.078 ± 0.896
2.078ArgThr: 2.078 ± 1.032
1.385ArgVal: 1.385 ± 0.557
0.0ArgTrp: 0.0 ± 0.0
2.078ArgTyr: 2.078 ± 0.896
0.0ArgXaa: 0.0 ± 0.0
Ser
9.003SerAla: 9.003 ± 4.522
1.385SerCys: 1.385 ± 0.746
6.925SerAsp: 6.925 ± 2.462
6.925SerGlu: 6.925 ± 0.614
2.77SerPhe: 2.77 ± 0.778
9.003SerGly: 9.003 ± 3.054
1.385SerHis: 1.385 ± 0.993
4.155SerIle: 4.155 ± 1.93
6.925SerLys: 6.925 ± 2.139
7.618SerLeu: 7.618 ± 0.85
0.693SerMet: 0.693 ± 0.588
9.003SerAsn: 9.003 ± 2.344
3.463SerPro: 3.463 ± 0.392
2.77SerGln: 2.77 ± 1.449
2.078SerArg: 2.078 ± 0.876
17.313SerSer: 17.313 ± 4.815
8.31SerThr: 8.31 ± 4.126
5.54SerVal: 5.54 ± 0.928
1.385SerTrp: 1.385 ± 0.557
3.463SerTyr: 3.463 ± 1.331
0.0SerXaa: 0.0 ± 0.0
Thr
4.848ThrAla: 4.848 ± 2.235
0.0ThrCys: 0.0 ± 0.0
2.77ThrAsp: 2.77 ± 0.758
2.078ThrGlu: 2.078 ± 1.227
3.463ThrPhe: 3.463 ± 0.392
6.925ThrGly: 6.925 ± 2.051
0.693ThrHis: 0.693 ± 0.693
1.385ThrIle: 1.385 ± 0.856
0.693ThrLys: 0.693 ± 0.497
2.77ThrLeu: 2.77 ± 1.892
0.0ThrMet: 0.0 ± 0.0
0.693ThrAsn: 0.693 ± 0.588
1.385ThrPro: 1.385 ± 0.557
1.385ThrGln: 1.385 ± 0.993
2.078ThrArg: 2.078 ± 1.49
9.003ThrSer: 9.003 ± 2.535
2.078ThrThr: 2.078 ± 0.896
6.925ThrVal: 6.925 ± 0.995
0.693ThrTrp: 0.693 ± 0.497
2.77ThrTyr: 2.77 ± 1.013
0.0ThrXaa: 0.0 ± 0.0
Val
6.233ValAla: 6.233 ± 1.616
0.693ValCys: 0.693 ± 0.497
2.77ValAsp: 2.77 ± 1.636
2.77ValGlu: 2.77 ± 1.449
4.848ValPhe: 4.848 ± 1.075
5.54ValGly: 5.54 ± 0.99
0.0ValHis: 0.0 ± 0.0
2.078ValIle: 2.078 ± 1.5
2.078ValLys: 2.078 ± 2.459
5.54ValLeu: 5.54 ± 2.462
0.0ValMet: 0.0 ± 0.0
4.848ValAsn: 4.848 ± 0.969
5.54ValPro: 5.54 ± 1.875
0.693ValGln: 0.693 ± 0.497
3.463ValArg: 3.463 ± 1.307
4.848ValSer: 4.848 ± 1.915
4.155ValThr: 4.155 ± 1.506
2.77ValVal: 2.77 ± 1.694
0.0ValTrp: 0.0 ± 0.0
2.078ValTyr: 2.078 ± 1.42
0.0ValXaa: 0.0 ± 0.0
Trp
0.693TrpAla: 0.693 ± 0.497
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.385TrpGlu: 1.385 ± 0.557
1.385TrpPhe: 1.385 ± 0.746
0.0TrpGly: 0.0 ± 0.0
0.693TrpHis: 0.693 ± 0.497
3.463TrpIle: 3.463 ± 1.778
1.385TrpLys: 1.385 ± 0.629
2.77TrpLeu: 2.77 ± 1.517
0.0TrpMet: 0.0 ± 0.0
2.078TrpAsn: 2.078 ± 1.764
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.0TrpSer: 0.0 ± 0.0
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.385TrpTyr: 1.385 ± 0.629
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.693TyrAla: 0.693 ± 0.497
2.77TyrCys: 2.77 ± 1.231
2.77TyrAsp: 2.77 ± 1.517
2.078TyrGlu: 2.078 ± 0.716
2.77TyrPhe: 2.77 ± 1.258
3.463TyrGly: 3.463 ± 2.065
1.385TyrHis: 1.385 ± 1.387
2.078TyrIle: 2.078 ± 0.876
2.078TyrLys: 2.078 ± 1.178
2.77TyrLeu: 2.77 ± 1.258
0.693TyrMet: 0.693 ± 0.497
3.463TyrAsn: 3.463 ± 1.084
0.693TyrPro: 0.693 ± 0.497
2.77TyrGln: 2.77 ± 1.113
2.078TyrArg: 2.078 ± 0.729
6.233TyrSer: 6.233 ± 1.761
1.385TyrThr: 1.385 ± 1.387
1.385TyrVal: 1.385 ± 0.956
0.693TyrTrp: 0.693 ± 0.497
2.77TyrTyr: 2.77 ± 0.7
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1445 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski