Facklamia hominis CCUG 36813

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia; Facklamia hominis

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1717 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K1LRY1|K1LRY1_9LACT Tetracycline resistance protein tetM OS=Facklamia hominis CCUG 36813 OX=883111 GN=HMPREF9706_01072 PE=3 SV=1
MM1 pKa = 7.34TNEE4 pKa = 4.33EE5 pKa = 4.76LEE7 pKa = 4.37SMIQEE12 pKa = 3.49IHH14 pKa = 6.48KK15 pKa = 10.57NIVEE19 pKa = 4.21NEE21 pKa = 4.0YY22 pKa = 11.19SSDD25 pKa = 3.95SIKK28 pKa = 11.22DD29 pKa = 3.43KK30 pKa = 11.05LADD33 pKa = 3.69YY34 pKa = 11.26ADD36 pKa = 5.02DD37 pKa = 5.55DD38 pKa = 4.62DD39 pKa = 6.33AISSSSLVAFVLNEE53 pKa = 3.73NRR55 pKa = 11.84HH56 pKa = 4.59YY57 pKa = 8.46TCTMIYY63 pKa = 10.49SLFSRR68 pKa = 11.84LLDD71 pKa = 3.1QGYY74 pKa = 9.48FSDD77 pKa = 5.57DD78 pKa = 3.49NPP80 pKa = 3.72

Molecular weight: 9.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K1LR34|K1LR34_9LACT Uncharacterized protein OS=Facklamia hominis CCUG 36813 OX=883111 GN=HMPREF9706_00767 PE=4 SV=1
LL1 pKa = 7.37NSISVTISTLFSTLNATRR19 pKa = 11.84VTISTIFSTLKK30 pKa = 10.24ALRR33 pKa = 11.84VTISTLFSTLNSISVTISTLFSTLSAMRR61 pKa = 11.84VTIPTRR67 pKa = 11.84CSTLNSIRR75 pKa = 11.84VTISTPFSTLSSISVTISTLFSTLNTARR103 pKa = 11.84VTISTLFSTLSPTRR117 pKa = 11.84ATIATLFGTLRR128 pKa = 11.84TLRR131 pKa = 11.84VTIPPHH137 pKa = 6.25FSTLRR142 pKa = 11.84TLRR145 pKa = 11.84ITISTRR151 pKa = 11.84FGTLSSLRR159 pKa = 11.84VTIPTRR165 pKa = 11.84FGTLRR170 pKa = 11.84TLRR173 pKa = 11.84VTIYY177 pKa = 10.39TRR179 pKa = 11.84FSTLSPTRR187 pKa = 11.84VTIPTRR193 pKa = 11.84CSTLSTLRR201 pKa = 11.84VTISTHH207 pKa = 5.94FSTLSSLRR215 pKa = 11.84VTIYY219 pKa = 10.53TRR221 pKa = 11.84FSTLSSISVTISTRR235 pKa = 11.84FSTLNTARR243 pKa = 11.84VTISTLFSTLSPTRR257 pKa = 11.84VTISTLFSTLSPISVTT273 pKa = 3.61

Molecular weight: 29.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1717

0

1717

552778

29

3044

321.9

36.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.218 ± 0.056

0.716 ± 0.017

5.977 ± 0.061

6.669 ± 0.078

4.231 ± 0.056

6.216 ± 0.058

2.062 ± 0.027

7.407 ± 0.07

6.248 ± 0.064

10.534 ± 0.09

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.555 ± 0.032

4.387 ± 0.044

3.552 ± 0.041

5.352 ± 0.069

4.176 ± 0.042

6.362 ± 0.053

4.924 ± 0.054

6.464 ± 0.044

0.918 ± 0.02

4.031 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski