Paramaledivibacter caminithermalis DSM 15212

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Paramaledivibacter; Paramaledivibacter caminithermalis

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3784 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6Q1N6|A0A1M6Q1N6_9CLOT L-asparaginase OS=Paramaledivibacter caminithermalis DSM 15212 OX=1121301 GN=SAMN02745912_02381 PE=3 SV=1
MM1 pKa = 7.48KK2 pKa = 10.05KK3 pKa = 10.16YY4 pKa = 10.52RR5 pKa = 11.84CIPCGYY11 pKa = 9.88EE12 pKa = 3.57YY13 pKa = 10.65DD14 pKa = 4.1PQVGDD19 pKa = 4.09PDD21 pKa = 4.19SGVAPGTAFEE31 pKa = 5.97DD32 pKa = 4.28IPDD35 pKa = 3.7DD36 pKa = 3.88WVCPVCGVGKK46 pKa = 10.52DD47 pKa = 3.17MFEE50 pKa = 4.09PVEE53 pKa = 4.0

Molecular weight: 5.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M6NYK6|A0A1M6NYK6_9CLOT Uncharacterized protein family (UPF0180) OS=Paramaledivibacter caminithermalis DSM 15212 OX=1121301 GN=SAMN02745912_01937 PE=4 SV=1
MM1 pKa = 7.74TYY3 pKa = 10.12QPKK6 pKa = 9.89KK7 pKa = 8.23RR8 pKa = 11.84QRR10 pKa = 11.84KK11 pKa = 8.39KK12 pKa = 8.49EE13 pKa = 3.5HH14 pKa = 6.11GFRR17 pKa = 11.84KK18 pKa = 9.77RR19 pKa = 11.84MKK21 pKa = 8.75TKK23 pKa = 10.24SGRR26 pKa = 11.84NVLKK30 pKa = 10.19RR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84KK35 pKa = 8.91GRR37 pKa = 11.84KK38 pKa = 9.02RR39 pKa = 11.84LTAA42 pKa = 4.18

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3784

0

3784

1112298

39

2372

293.9

33.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.55 ± 0.041

1.059 ± 0.017

5.592 ± 0.031

7.434 ± 0.044

4.352 ± 0.031

6.42 ± 0.041

1.459 ± 0.015

10.65 ± 0.05

9.341 ± 0.046

9.11 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.596 ± 0.018

5.964 ± 0.037

2.924 ± 0.024

2.314 ± 0.019

3.772 ± 0.027

5.814 ± 0.03

4.664 ± 0.024

6.152 ± 0.034

0.708 ± 0.013

4.125 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski