Cladophialophora immunda

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Cladophialophora

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13606 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D2BWH6|A0A0D2BWH6_9EURO Uncharacterized protein OS=Cladophialophora immunda OX=569365 GN=PV07_11612 PE=4 SV=1
QQ1 pKa = 6.77QPALAVYY8 pKa = 9.45QLIQDD13 pKa = 3.94YY14 pKa = 11.13SSDD17 pKa = 3.82AFWQGFDD24 pKa = 4.29FFTDD28 pKa = 3.74PDD30 pKa = 3.85PTDD33 pKa = 3.8ALVQFQSLEE42 pKa = 3.89QANATGIAGFIEE54 pKa = 4.58GGNASFAIYY63 pKa = 9.63MGVDD67 pKa = 3.55TEE69 pKa = 4.47NVAPQGRR76 pKa = 11.84ASVGVSSSQSFQHH89 pKa = 6.39ALVIADD95 pKa = 3.73IVHH98 pKa = 5.95MPGGVCGSWPAFWMVGANWPNNGEE122 pKa = 3.77IDD124 pKa = 3.41IVEE127 pKa = 4.36GVNDD131 pKa = 3.61QPTNSMTLHH140 pKa = 6.53TGQGAVVSNGTDD152 pKa = 3.58FSGEE156 pKa = 4.64LITSNCDD163 pKa = 2.9AGGGVLATEE172 pKa = 4.61WTADD176 pKa = 4.11FIKK179 pKa = 10.11IWFFPRR185 pKa = 11.84GTFPDD190 pKa = 5.33DD191 pKa = 3.13IVSSNPTPSEE201 pKa = 3.51NWGTRR206 pKa = 11.84NSLFQGSFNLDD217 pKa = 3.09DD218 pKa = 4.85HH219 pKa = 6.99FNNLQIVFDD228 pKa = 4.02TTFCGQQ234 pKa = 3.02

Molecular weight: 25.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D2CWI6|A0A0D2CWI6_9EURO RNA exonuclease 4 OS=Cladophialophora immunda OX=569365 GN=PV07_01051 PE=3 SV=1
MM1 pKa = 7.12QYY3 pKa = 10.62RR4 pKa = 11.84RR5 pKa = 11.84IILEE9 pKa = 3.59QRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 10.28CSEE16 pKa = 4.18DD17 pKa = 3.43KK18 pKa = 10.84DD19 pKa = 4.19GKK21 pKa = 7.06QQRR24 pKa = 11.84GQEE27 pKa = 4.43LNPDD31 pKa = 3.45WAVTGAATRR40 pKa = 11.84TSLSLKK46 pKa = 10.01AAVAPRR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84SIFSRR59 pKa = 11.84QGVALVPCRR68 pKa = 11.84QSLDD72 pKa = 3.36RR73 pKa = 11.84RR74 pKa = 11.84VKK76 pKa = 9.63LQGIKK81 pKa = 10.44DD82 pKa = 3.58HH83 pKa = 6.94ASPIVRR89 pKa = 11.84LPYY92 pKa = 10.4SYY94 pKa = 11.14AAWTSGFPPLCCRR107 pKa = 11.84ITHH110 pKa = 6.25SKK112 pKa = 10.21HH113 pKa = 5.34LWLEE117 pKa = 4.01RR118 pKa = 11.84SRR120 pKa = 11.84CVCII124 pKa = 4.63

Molecular weight: 14.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12829

777

13606

6726764

31

6211

494.4

54.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.674 ± 0.018

1.296 ± 0.008

5.691 ± 0.014

6.102 ± 0.018

3.719 ± 0.012

6.768 ± 0.017

2.494 ± 0.009

4.796 ± 0.013

4.622 ± 0.016

9.062 ± 0.02

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.167 ± 0.008

3.512 ± 0.009

6.109 ± 0.019

4.167 ± 0.012

6.328 ± 0.017

8.202 ± 0.021

5.973 ± 0.016

6.106 ± 0.012

1.485 ± 0.008

2.726 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski