Desulfovibrio litoralis DSM 11393

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio litoralis

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2355 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M7THM2|A0A1M7THM2_9DELT Uncharacterized protein OS=Desulfovibrio litoralis DSM 11393 OX=1121455 GN=SAMN02745728_02014 PE=4 SV=1
MM1 pKa = 7.9CYY3 pKa = 10.34FEE5 pKa = 5.35GYY7 pKa = 10.14KK8 pKa = 10.3VDD10 pKa = 3.89DD11 pKa = 3.97YY12 pKa = 11.83YY13 pKa = 10.67IAFVLEE19 pKa = 4.26VNGVDD24 pKa = 4.2VTDD27 pKa = 4.54LLNLYY32 pKa = 10.02SAFGRR37 pKa = 11.84TFKK40 pKa = 10.97NLEE43 pKa = 4.17SNEE46 pKa = 4.11AALPLYY52 pKa = 10.45VKK54 pKa = 10.66NQFLNWARR62 pKa = 11.84YY63 pKa = 8.43SGLNISEE70 pKa = 3.7IRR72 pKa = 11.84IYY74 pKa = 11.19DD75 pKa = 4.28CINGNILPVPSSINYY90 pKa = 9.17YY91 pKa = 10.56EE92 pKa = 4.38NDD94 pKa = 3.41NALSILWEE102 pKa = 3.92IDD104 pKa = 2.81RR105 pKa = 11.84DD106 pKa = 3.51IDD108 pKa = 4.06VVPDD112 pKa = 3.22QTSYY116 pKa = 9.05FTWSII121 pKa = 3.46

Molecular weight: 14.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M7RU64|A0A1M7RU64_9DELT Uncharacterized protein OS=Desulfovibrio litoralis DSM 11393 OX=1121455 GN=SAMN02745728_00179 PE=4 SV=1
MM1 pKa = 6.97QRR3 pKa = 11.84TYY5 pKa = 10.54QPSVIKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 8.01RR14 pKa = 11.84THH16 pKa = 6.0GFRR19 pKa = 11.84EE20 pKa = 4.11RR21 pKa = 11.84MSTAAGRR28 pKa = 11.84NIIRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AIGRR39 pKa = 11.84KK40 pKa = 8.97RR41 pKa = 11.84LAVV44 pKa = 3.43

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2355

0

2355

790836

40

3881

335.8

37.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.646 ± 0.057

1.253 ± 0.022

4.96 ± 0.049

6.572 ± 0.048

4.639 ± 0.038

6.403 ± 0.057

1.822 ± 0.019

7.205 ± 0.047

7.165 ± 0.054

10.809 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.268 ± 0.028

5.385 ± 0.052

3.94 ± 0.032

3.753 ± 0.042

3.957 ± 0.04

6.676 ± 0.044

5.314 ± 0.053

6.111 ± 0.04

1.011 ± 0.016

3.111 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski