Cladophialophora psammophila CBS 110553

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Cladophialophora; Cladophialophora psammophila

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13417 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W9X6U1|W9X6U1_9EURO L-lactate dehydrogenase OS=Cladophialophora psammophila CBS 110553 OX=1182543 GN=A1O5_04199 PE=3 SV=1
MM1 pKa = 7.71RR2 pKa = 11.84CDD4 pKa = 4.79GNDD7 pKa = 3.31PCAKK11 pKa = 10.11CLSTDD16 pKa = 3.54SACQYY21 pKa = 9.65SAPASSSSVPSDD33 pKa = 3.2TLSARR38 pKa = 11.84TPTEE42 pKa = 3.92AYY44 pKa = 10.24SFQATGDD51 pKa = 3.64FNAPLLVPTTANVAGEE67 pKa = 4.28FASQYY72 pKa = 10.37PGLHH76 pKa = 6.47LEE78 pKa = 4.55ASSTGPSNCEE88 pKa = 3.75TVDD91 pKa = 5.55LDD93 pKa = 5.38SLDD96 pKa = 3.77NDD98 pKa = 3.76DD99 pKa = 5.29RR100 pKa = 11.84NVPRR104 pKa = 11.84LGLSRR109 pKa = 11.84PAASTLDD116 pKa = 3.69SMSCDD121 pKa = 3.39VLAMPISPDD130 pKa = 3.57DD131 pKa = 4.39DD132 pKa = 3.52FLQFFSAEE140 pKa = 3.93GMRR143 pKa = 11.84GQWQTTPVVV152 pKa = 3.29

Molecular weight: 16.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W9X2G0|W9X2G0_9EURO S-formylglutathione hydrolase OS=Cladophialophora psammophila CBS 110553 OX=1182543 GN=A1O5_02634 PE=3 SV=1
MM1 pKa = 6.54NTARR5 pKa = 11.84LLRR8 pKa = 11.84LQPLRR13 pKa = 11.84AVGLRR18 pKa = 11.84QAAFRR23 pKa = 11.84QSAQKK28 pKa = 8.28QTARR32 pKa = 11.84PFHH35 pKa = 5.15NTRR38 pKa = 11.84TRR40 pKa = 11.84FRR42 pKa = 11.84TKK44 pKa = 9.05VSKK47 pKa = 10.65RR48 pKa = 11.84ISS50 pKa = 3.18

Molecular weight: 5.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13417

0

13417

6277743

49

6117

467.9

51.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.628 ± 0.016

1.269 ± 0.008

5.607 ± 0.014

6.105 ± 0.021

3.818 ± 0.014

6.897 ± 0.019

2.443 ± 0.01

5.035 ± 0.013

4.748 ± 0.016

9.09 ± 0.022

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.2 ± 0.007

3.61 ± 0.01

5.94 ± 0.019

4.073 ± 0.014

6.124 ± 0.016

7.981 ± 0.023

5.904 ± 0.015

6.202 ± 0.015

1.519 ± 0.008

2.806 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski