Reichenbachiella faecimaris

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Reichenbachiellaceae; Reichenbachiella

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3972 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W2GHE7|A0A1W2GHE7_9BACT Antitoxin component YwqK of the YwqJK toxin-antitoxin module OS=Reichenbachiella faecimaris OX=692418 GN=SAMN04488029_2702 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 10.33NFKK5 pKa = 10.1IYY7 pKa = 9.87TLILVSACIAFSCDD21 pKa = 3.51EE22 pKa = 4.22EE23 pKa = 5.65DD24 pKa = 5.54KK25 pKa = 11.34LITDD29 pKa = 4.56ILTEE33 pKa = 4.2NPLPVPTGDD42 pKa = 3.9PGEE45 pKa = 5.02LDD47 pKa = 3.33LSTYY51 pKa = 9.86VAIGNSLTAGFQDD64 pKa = 3.1NALYY68 pKa = 10.29TDD70 pKa = 3.8GQINAFPAYY79 pKa = 9.0LTTQFSAQGVGGGDD93 pKa = 3.39YY94 pKa = 10.66VYY96 pKa = 11.0PDD98 pKa = 3.31INSEE102 pKa = 4.0NGYY105 pKa = 10.49SGTDD109 pKa = 3.33GTNLFGKK116 pKa = 10.3YY117 pKa = 9.34ILNITEE123 pKa = 4.2LGIEE127 pKa = 4.25ISAGEE132 pKa = 3.99NNIGLRR138 pKa = 11.84ATEE141 pKa = 4.53DD142 pKa = 3.57EE143 pKa = 5.11IEE145 pKa = 4.12ALTNFGVPGATISDD159 pKa = 3.99LDD161 pKa = 4.1DD162 pKa = 4.37ASFANPYY169 pKa = 9.91FLRR172 pKa = 11.84FSSNPLNVSILDD184 pKa = 3.61DD185 pKa = 3.72VVARR189 pKa = 11.84NPTFISLWIGSNDD202 pKa = 3.4YY203 pKa = 10.94LGYY206 pKa = 10.99ALGGAASGAPTDD218 pKa = 3.52VATFQTMFTNHH229 pKa = 4.57MTKK232 pKa = 10.59LAGTGAKK239 pKa = 9.88GVVLNLPPVTLIPYY253 pKa = 9.21FRR255 pKa = 11.84AVPYY259 pKa = 10.44NAVPLTDD266 pKa = 3.64QSDD269 pKa = 3.82VDD271 pKa = 4.39DD272 pKa = 5.54LNAATAFGGYY282 pKa = 8.75NAALDD287 pKa = 5.17GIAAMDD293 pKa = 4.32PNFSQEE299 pKa = 4.1DD300 pKa = 3.43ADD302 pKa = 4.03EE303 pKa = 4.81RR304 pKa = 11.84KK305 pKa = 8.33VTYY308 pKa = 10.51SLGANPVLIKK318 pKa = 10.54DD319 pKa = 3.67TDD321 pKa = 4.11LVDD324 pKa = 4.02LTTTLAGINPALALYY339 pKa = 9.5GQTRR343 pKa = 11.84QANEE347 pKa = 3.66NDD349 pKa = 4.91LILLPASTLIGTDD362 pKa = 3.39AEE364 pKa = 4.47GLPDD368 pKa = 3.88VPIGVANPLGDD379 pKa = 3.78EE380 pKa = 4.3YY381 pKa = 11.85VLTFSEE387 pKa = 4.33QVEE390 pKa = 4.94VITARR395 pKa = 11.84ATFNGVISAVLANSAFSNFKK415 pKa = 10.65LVDD418 pKa = 3.51IQPFFADD425 pKa = 3.64AFGLSAAQATALALTSDD442 pKa = 5.13AIAAADD448 pKa = 3.65GVLGIEE454 pKa = 4.31YY455 pKa = 10.31QGFDD459 pKa = 3.81YY460 pKa = 11.37SPDD463 pKa = 3.5FTPNGLWSNDD473 pKa = 2.91GVHH476 pKa = 6.63PNPRR480 pKa = 11.84GHH482 pKa = 7.25AIVANEE488 pKa = 4.21IIEE491 pKa = 4.43TMNEE495 pKa = 3.41TWSADD500 pKa = 3.14IPTVTVNQKK509 pKa = 9.59RR510 pKa = 11.84ASPFTQQ516 pKa = 3.08

Molecular weight: 54.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W2GMQ2|A0A1W2GMQ2_9BACT 3-oxoacyl-[acyl-carrier-protein] reductase OS=Reichenbachiella faecimaris OX=692418 GN=SAMN04488029_3551 PE=4 SV=1
MM1 pKa = 7.57KK2 pKa = 10.5GIQEE6 pKa = 4.23FFEE9 pKa = 4.66KK10 pKa = 10.83YY11 pKa = 10.66AFGVCTRR18 pKa = 11.84LGEE21 pKa = 4.23KK22 pKa = 10.34LRR24 pKa = 11.84IPSSSIRR31 pKa = 11.84LFFIYY36 pKa = 10.14TSFLTFGSPVLVYY49 pKa = 11.01LMLAFVMNFRR59 pKa = 11.84KK60 pKa = 10.04HH61 pKa = 3.6IRR63 pKa = 11.84RR64 pKa = 11.84RR65 pKa = 11.84HH66 pKa = 4.71SLWYY70 pKa = 9.8HH71 pKa = 6.01

Molecular weight: 8.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3972

0

3972

1432065

29

9392

360.5

40.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.695 ± 0.039

0.749 ± 0.012

5.946 ± 0.053

6.835 ± 0.04

5.001 ± 0.029

6.782 ± 0.045

1.919 ± 0.02

7.42 ± 0.035

6.747 ± 0.06

9.453 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.416 ± 0.024

5.456 ± 0.034

3.35 ± 0.021

3.636 ± 0.023

3.593 ± 0.03

6.99 ± 0.035

5.519 ± 0.055

6.328 ± 0.031

1.146 ± 0.016

4.02 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski