Amino acid dipepetide frequency for Chimpanzee associated porprismacovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.541AlaAla: 1.541 ± 1.006
3.082AlaCys: 3.082 ± 2.012
7.704AlaAsp: 7.704 ± 5.029
0.0AlaGlu: 0.0 ± 0.0
0.0AlaPhe: 0.0 ± 0.0
12.327AlaGly: 12.327 ± 1.004
1.541AlaHis: 1.541 ± 1.257
6.163AlaIle: 6.163 ± 0.502
1.541AlaLys: 1.541 ± 1.006
9.245AlaLeu: 9.245 ± 3.016
3.082AlaMet: 3.082 ± 2.012
3.082AlaAsn: 3.082 ± 0.251
1.541AlaPro: 1.541 ± 1.006
1.541AlaGln: 1.541 ± 1.006
4.622AlaArg: 4.622 ± 0.755
7.704AlaSer: 7.704 ± 2.766
4.622AlaThr: 4.622 ± 0.755
1.541AlaVal: 1.541 ± 1.257
0.0AlaTrp: 0.0 ± 0.0
3.082AlaTyr: 3.082 ± 0.251
0.0AlaXaa: 0.0 ± 0.0
Cys
3.082CysAla: 3.082 ± 0.251
0.0CysCys: 0.0 ± 0.0
1.541CysAsp: 1.541 ± 1.006
1.541CysGlu: 1.541 ± 1.257
1.541CysPhe: 1.541 ± 1.006
1.541CysGly: 1.541 ± 1.257
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.541CysLeu: 1.541 ± 1.257
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.541CysPro: 1.541 ± 1.257
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.541CysSer: 1.541 ± 1.006
1.541CysThr: 1.541 ± 1.006
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.082AspAla: 3.082 ± 2.012
1.541AspCys: 1.541 ± 1.006
0.0AspAsp: 0.0 ± 0.0
1.541AspGlu: 1.541 ± 1.006
0.0AspPhe: 0.0 ± 0.0
9.245AspGly: 9.245 ± 3.016
0.0AspHis: 0.0 ± 0.0
3.082AspIle: 3.082 ± 0.251
3.082AspLys: 3.082 ± 0.251
3.082AspLeu: 3.082 ± 2.012
1.541AspMet: 1.541 ± 1.006
3.082AspAsn: 3.082 ± 0.251
4.622AspPro: 4.622 ± 1.508
3.082AspGln: 3.082 ± 0.251
6.163AspArg: 6.163 ± 2.765
7.704AspSer: 7.704 ± 2.766
6.163AspThr: 6.163 ± 4.023
4.622AspVal: 4.622 ± 3.017
0.0AspTrp: 0.0 ± 0.0
3.082AspTyr: 3.082 ± 0.251
0.0AspXaa: 0.0 ± 0.0
Glu
6.163GluAla: 6.163 ± 2.765
0.0GluCys: 0.0 ± 0.0
1.541GluAsp: 1.541 ± 1.257
0.0GluGlu: 0.0 ± 0.0
3.082GluPhe: 3.082 ± 0.251
4.622GluGly: 4.622 ± 0.755
0.0GluHis: 0.0 ± 0.0
1.541GluIle: 1.541 ± 1.257
0.0GluLys: 0.0 ± 0.0
1.541GluLeu: 1.541 ± 1.257
0.0GluMet: 0.0 ± 0.0
0.0GluAsn: 0.0 ± 0.0
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
3.082GluArg: 3.082 ± 2.514
1.541GluSer: 1.541 ± 1.006
3.082GluThr: 3.082 ± 0.251
1.541GluVal: 1.541 ± 1.006
0.0GluTrp: 0.0 ± 0.0
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.082PheAla: 3.082 ± 2.012
0.0PheCys: 0.0 ± 0.0
0.0PheAsp: 0.0 ± 0.0
0.0PheGlu: 0.0 ± 0.0
0.0PhePhe: 0.0 ± 0.0
7.704PheGly: 7.704 ± 0.504
0.0PheHis: 0.0 ± 0.0
0.0PheIle: 0.0 ± 0.0
1.541PheLys: 1.541 ± 1.006
0.0PheLeu: 0.0 ± 0.0
0.0PheMet: 0.0 ± 0.0
1.541PheAsn: 1.541 ± 1.006
0.0PhePro: 0.0 ± 0.0
1.541PheGln: 1.541 ± 1.006
3.082PheArg: 3.082 ± 2.012
1.541PheSer: 1.541 ± 1.006
0.0PheThr: 0.0 ± 0.0
6.163PheVal: 6.163 ± 4.023
0.0PheTrp: 0.0 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
6.163GlyAla: 6.163 ± 0.502
3.082GlyCys: 3.082 ± 2.514
4.622GlyAsp: 4.622 ± 3.017
0.0GlyGlu: 0.0 ± 0.0
3.082GlyPhe: 3.082 ± 2.012
3.082GlyGly: 3.082 ± 0.251
6.163GlyHis: 6.163 ± 5.027
6.163GlyIle: 6.163 ± 0.502
7.704GlyLys: 7.704 ± 1.759
12.327GlyLeu: 12.327 ± 3.521
3.082GlyMet: 3.082 ± 2.012
4.622GlyAsn: 4.622 ± 0.755
1.541GlyPro: 1.541 ± 1.006
3.082GlyGln: 3.082 ± 0.251
4.622GlyArg: 4.622 ± 1.508
6.163GlySer: 6.163 ± 4.023
3.082GlyThr: 3.082 ± 2.514
4.622GlyVal: 4.622 ± 0.755
1.541GlyTrp: 1.541 ± 1.006
7.704GlyTyr: 7.704 ± 4.021
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
1.541HisGlu: 1.541 ± 1.257
0.0HisPhe: 0.0 ± 0.0
3.082HisGly: 3.082 ± 0.251
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
0.0HisLys: 0.0 ± 0.0
1.541HisLeu: 1.541 ± 1.257
1.541HisMet: 1.541 ± 1.257
1.541HisAsn: 1.541 ± 1.257
1.541HisPro: 1.541 ± 1.257
0.0HisGln: 0.0 ± 0.0
1.541HisArg: 1.541 ± 1.257
0.0HisSer: 0.0 ± 0.0
1.541HisThr: 1.541 ± 1.006
1.541HisVal: 1.541 ± 1.257
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.082IleAla: 3.082 ± 2.012
0.0IleCys: 0.0 ± 0.0
3.082IleAsp: 3.082 ± 0.251
3.082IleGlu: 3.082 ± 0.251
0.0IlePhe: 0.0 ± 0.0
3.082IleGly: 3.082 ± 0.251
3.082IleHis: 3.082 ± 0.251
0.0IleIle: 0.0 ± 0.0
1.541IleLys: 1.541 ± 1.257
1.541IleLeu: 1.541 ± 1.006
1.541IleMet: 1.541 ± 1.257
1.541IleAsn: 1.541 ± 1.006
3.082IlePro: 3.082 ± 2.514
3.082IleGln: 3.082 ± 2.514
3.082IleArg: 3.082 ± 2.514
6.163IleSer: 6.163 ± 2.765
3.082IleThr: 3.082 ± 2.012
6.163IleVal: 6.163 ± 2.765
0.0IleTrp: 0.0 ± 0.0
0.0IleTyr: 0.0 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.622LysAla: 4.622 ± 0.755
0.0LysCys: 0.0 ± 0.0
1.541LysAsp: 1.541 ± 1.257
0.0LysGlu: 0.0 ± 0.0
1.541LysPhe: 1.541 ± 1.006
0.0LysGly: 0.0 ± 0.0
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
0.0LysLys: 0.0 ± 0.0
6.163LysLeu: 6.163 ± 0.502
4.622LysMet: 4.622 ± 0.755
3.082LysAsn: 3.082 ± 2.012
3.082LysPro: 3.082 ± 0.251
0.0LysGln: 0.0 ± 0.0
3.082LysArg: 3.082 ± 2.514
1.541LysSer: 1.541 ± 1.257
0.0LysThr: 0.0 ± 0.0
6.163LysVal: 6.163 ± 1.761
1.541LysTrp: 1.541 ± 1.257
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.163LeuAla: 6.163 ± 1.761
1.541LeuCys: 1.541 ± 1.257
7.704LeuAsp: 7.704 ± 1.759
1.541LeuGlu: 1.541 ± 1.257
3.082LeuPhe: 3.082 ± 2.012
1.541LeuGly: 1.541 ± 1.006
0.0LeuHis: 0.0 ± 0.0
3.082LeuIle: 3.082 ± 2.514
1.541LeuLys: 1.541 ± 1.257
4.622LeuLeu: 4.622 ± 0.755
0.0LeuMet: 0.0 ± 0.0
3.082LeuAsn: 3.082 ± 2.012
6.163LeuPro: 6.163 ± 1.761
6.163LeuGln: 6.163 ± 0.502
1.541LeuArg: 1.541 ± 1.006
4.622LeuSer: 4.622 ± 1.508
7.704LeuThr: 7.704 ± 2.766
7.704LeuVal: 7.704 ± 1.759
0.0LeuTrp: 0.0 ± 0.0
10.786LeuTyr: 10.786 ± 2.01
0.0LeuXaa: 0.0 ± 0.0
Met
1.541MetAla: 1.541 ± 1.006
0.0MetCys: 0.0 ± 0.0
1.541MetAsp: 1.541 ± 1.257
1.541MetGlu: 1.541 ± 1.006
4.622MetPhe: 4.622 ± 0.755
9.245MetGly: 9.245 ± 3.016
1.541MetHis: 1.541 ± 1.006
1.541MetIle: 1.541 ± 1.257
1.541MetLys: 1.541 ± 1.006
1.541MetLeu: 1.541 ± 1.006
0.0MetMet: 0.0 ± 0.811
0.0MetAsn: 0.0 ± 0.0
3.082MetPro: 3.082 ± 2.012
1.541MetGln: 1.541 ± 1.257
3.082MetArg: 3.082 ± 0.251
1.541MetSer: 1.541 ± 1.006
0.0MetThr: 0.0 ± 0.0
3.082MetVal: 3.082 ± 2.012
1.541MetTrp: 1.541 ± 1.006
1.541MetTyr: 1.541 ± 1.006
0.0MetXaa: 0.0 ± 0.0
Asn
0.0AsnAla: 0.0 ± 0.0
0.0AsnCys: 0.0 ± 0.0
9.245AsnAsp: 9.245 ± 0.753
0.0AsnGlu: 0.0 ± 0.0
3.082AsnPhe: 3.082 ± 2.012
6.163AsnGly: 6.163 ± 4.023
0.0AsnHis: 0.0 ± 0.0
1.541AsnIle: 1.541 ± 1.257
1.541AsnLys: 1.541 ± 1.006
3.082AsnLeu: 3.082 ± 0.251
3.082AsnMet: 3.082 ± 0.251
0.0AsnAsn: 0.0 ± 0.0
3.082AsnPro: 3.082 ± 0.251
1.541AsnGln: 1.541 ± 1.257
3.082AsnArg: 3.082 ± 2.012
3.082AsnSer: 3.082 ± 0.251
4.622AsnThr: 4.622 ± 0.755
3.082AsnVal: 3.082 ± 2.012
1.541AsnTrp: 1.541 ± 1.006
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
6.163ProAla: 6.163 ± 1.761
0.0ProCys: 0.0 ± 0.0
3.082ProAsp: 3.082 ± 2.012
3.082ProGlu: 3.082 ± 2.012
0.0ProPhe: 0.0 ± 0.0
1.541ProGly: 1.541 ± 1.006
1.541ProHis: 1.541 ± 1.257
3.082ProIle: 3.082 ± 2.012
1.541ProLys: 1.541 ± 1.257
9.245ProLeu: 9.245 ± 3.016
0.0ProMet: 0.0 ± 0.0
3.082ProAsn: 3.082 ± 2.012
4.622ProPro: 4.622 ± 1.508
3.082ProGln: 3.082 ± 2.012
7.704ProArg: 7.704 ± 6.284
1.541ProSer: 1.541 ± 1.006
1.541ProThr: 1.541 ± 1.006
1.541ProVal: 1.541 ± 1.257
0.0ProTrp: 0.0 ± 0.0
1.541ProTyr: 1.541 ± 1.257
0.0ProXaa: 0.0 ± 0.0
Gln
3.082GlnAla: 3.082 ± 0.251
1.541GlnCys: 1.541 ± 1.257
4.622GlnAsp: 4.622 ± 1.508
1.541GlnGlu: 1.541 ± 1.257
1.541GlnPhe: 1.541 ± 1.006
0.0GlnGly: 0.0 ± 0.0
0.0GlnHis: 0.0 ± 0.0
1.541GlnIle: 1.541 ± 1.006
0.0GlnLys: 0.0 ± 0.0
1.541GlnLeu: 1.541 ± 1.006
4.622GlnMet: 4.622 ± 1.508
3.082GlnAsn: 3.082 ± 0.251
1.541GlnPro: 1.541 ± 1.006
0.0GlnGln: 0.0 ± 0.0
1.541GlnArg: 1.541 ± 1.257
3.082GlnSer: 3.082 ± 0.251
4.622GlnThr: 4.622 ± 0.755
0.0GlnVal: 0.0 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.541GlnTyr: 1.541 ± 1.006
0.0GlnXaa: 0.0 ± 0.0
Arg
7.704ArgAla: 7.704 ± 1.759
0.0ArgCys: 0.0 ± 0.0
0.0ArgAsp: 0.0 ± 0.0
3.082ArgGlu: 3.082 ± 2.514
0.0ArgPhe: 0.0 ± 0.0
6.163ArgGly: 6.163 ± 2.765
0.0ArgHis: 0.0 ± 0.0
3.082ArgIle: 3.082 ± 2.514
6.163ArgLys: 6.163 ± 1.761
3.082ArgLeu: 3.082 ± 2.012
3.082ArgMet: 3.082 ± 0.251
1.541ArgAsn: 1.541 ± 1.006
7.704ArgPro: 7.704 ± 4.021
0.0ArgGln: 0.0 ± 0.0
7.704ArgArg: 7.704 ± 6.284
6.163ArgSer: 6.163 ± 5.027
1.541ArgThr: 1.541 ± 1.257
1.541ArgVal: 1.541 ± 1.257
4.622ArgTrp: 4.622 ± 3.77
4.622ArgTyr: 4.622 ± 1.508
0.0ArgXaa: 0.0 ± 0.0
Ser
1.541SerAla: 1.541 ± 1.006
1.541SerCys: 1.541 ± 1.006
4.622SerAsp: 4.622 ± 3.017
4.622SerGlu: 4.622 ± 1.508
1.541SerPhe: 1.541 ± 1.006
6.163SerGly: 6.163 ± 1.761
0.0SerHis: 0.0 ± 0.0
1.541SerIle: 1.541 ± 1.006
0.0SerLys: 0.0 ± 0.0
4.622SerLeu: 4.622 ± 0.755
6.163SerMet: 6.163 ± 1.352
6.163SerAsn: 6.163 ± 4.023
0.0SerPro: 0.0 ± 0.0
1.541SerGln: 1.541 ± 1.257
3.082SerArg: 3.082 ± 2.514
0.0SerSer: 0.0 ± 0.0
15.408SerThr: 15.408 ± 1.255
6.163SerVal: 6.163 ± 1.761
3.082SerTrp: 3.082 ± 2.514
3.082SerTyr: 3.082 ± 0.251
0.0SerXaa: 0.0 ± 0.0
Thr
6.163ThrAla: 6.163 ± 1.761
1.541ThrCys: 1.541 ± 1.257
3.082ThrAsp: 3.082 ± 2.012
1.541ThrGlu: 1.541 ± 1.257
1.541ThrPhe: 1.541 ± 1.006
4.622ThrGly: 4.622 ± 0.755
1.541ThrHis: 1.541 ± 1.257
7.704ThrIle: 7.704 ± 0.504
4.622ThrLys: 4.622 ± 1.508
1.541ThrLeu: 1.541 ± 1.006
3.082ThrMet: 3.082 ± 2.012
4.622ThrAsn: 4.622 ± 1.508
6.163ThrPro: 6.163 ± 4.023
3.082ThrGln: 3.082 ± 2.012
1.541ThrArg: 1.541 ± 1.257
7.704ThrSer: 7.704 ± 2.766
1.541ThrThr: 1.541 ± 1.006
6.163ThrVal: 6.163 ± 0.502
1.541ThrTrp: 1.541 ± 1.006
1.541ThrTyr: 1.541 ± 1.006
0.0ThrXaa: 0.0 ± 0.0
Val
4.622ValAla: 4.622 ± 0.755
1.541ValCys: 1.541 ± 1.006
4.622ValAsp: 4.622 ± 0.755
1.541ValGlu: 1.541 ± 1.006
1.541ValPhe: 1.541 ± 1.006
4.622ValGly: 4.622 ± 0.755
0.0ValHis: 0.0 ± 0.0
3.082ValIle: 3.082 ± 2.514
1.541ValLys: 1.541 ± 1.006
7.704ValLeu: 7.704 ± 1.759
1.541ValMet: 1.541 ± 1.006
4.622ValAsn: 4.622 ± 1.508
1.541ValPro: 1.541 ± 1.006
6.163ValGln: 6.163 ± 0.502
3.082ValArg: 3.082 ± 2.514
4.622ValSer: 4.622 ± 3.017
4.622ValThr: 4.622 ± 3.017
4.622ValVal: 4.622 ± 0.755
1.541ValTrp: 1.541 ± 1.257
4.622ValTyr: 4.622 ± 0.755
0.0ValXaa: 0.0 ± 0.0
Trp
1.541TrpAla: 1.541 ± 1.257
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.541TrpLys: 1.541 ± 1.257
1.541TrpLeu: 1.541 ± 1.257
0.0TrpMet: 0.0 ± 0.0
1.541TrpAsn: 1.541 ± 1.257
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.541TrpArg: 1.541 ± 1.006
3.082TrpSer: 3.082 ± 0.251
1.541TrpThr: 1.541 ± 1.006
1.541TrpVal: 1.541 ± 1.257
0.0TrpTrp: 0.0 ± 0.0
3.082TrpTyr: 3.082 ± 0.251
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.622TyrAla: 4.622 ± 0.755
0.0TyrCys: 0.0 ± 0.0
6.163TyrAsp: 6.163 ± 0.502
1.541TyrGlu: 1.541 ± 1.257
0.0TyrPhe: 0.0 ± 0.0
7.704TyrGly: 7.704 ± 0.504
0.0TyrHis: 0.0 ± 0.0
3.082TyrIle: 3.082 ± 2.514
1.541TyrLys: 1.541 ± 1.006
3.082TyrLeu: 3.082 ± 0.251
3.082TyrMet: 3.082 ± 0.251
1.541TyrAsn: 1.541 ± 1.006
3.082TyrPro: 3.082 ± 0.251
0.0TyrGln: 0.0 ± 0.0
4.622TyrArg: 4.622 ± 1.508
1.541TyrSer: 1.541 ± 1.257
4.622TyrThr: 4.622 ± 1.508
0.0TyrVal: 0.0 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
4.622TyrTyr: 4.622 ± 0.755
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (650 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski