Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_472

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.56AlaAla: 4.56 ± 2.784
1.954AlaCys: 1.954 ± 0.845
7.166AlaAsp: 7.166 ± 1.34
3.909AlaGlu: 3.909 ± 1.671
3.909AlaPhe: 3.909 ± 2.242
3.909AlaGly: 3.909 ± 2.851
1.954AlaHis: 1.954 ± 0.821
5.212AlaIle: 5.212 ± 1.491
3.909AlaLys: 3.909 ± 2.191
1.303AlaLeu: 1.303 ± 0.944
1.303AlaMet: 1.303 ± 1.03
3.909AlaAsn: 3.909 ± 1.455
0.651AlaPro: 0.651 ± 0.472
5.212AlaGln: 5.212 ± 1.972
2.606AlaArg: 2.606 ± 1.232
4.56AlaSer: 4.56 ± 2.271
2.606AlaThr: 2.606 ± 1.179
3.257AlaVal: 3.257 ± 1.724
0.0AlaTrp: 0.0 ± 0.0
4.56AlaTyr: 4.56 ± 1.992
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.651CysAsp: 0.651 ± 0.57
0.651CysGlu: 0.651 ± 0.75
1.303CysPhe: 1.303 ± 0.526
1.303CysGly: 1.303 ± 1.14
0.0CysHis: 0.0 ± 0.0
0.651CysIle: 0.651 ± 0.846
1.303CysLys: 1.303 ± 0.526
2.606CysLeu: 2.606 ± 1.145
0.0CysMet: 0.0 ± 0.0
1.954CysAsn: 1.954 ± 1.71
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.651CysArg: 0.651 ± 0.57
0.651CysSer: 0.651 ± 0.846
1.303CysThr: 1.303 ± 0.966
0.651CysVal: 0.651 ± 0.472
0.651CysTrp: 0.651 ± 0.57
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.606AspAla: 2.606 ± 0.924
0.0AspCys: 0.0 ± 0.0
0.0AspAsp: 0.0 ± 0.0
6.515AspGlu: 6.515 ± 2.401
2.606AspPhe: 2.606 ± 0.916
1.303AspGly: 1.303 ± 0.853
0.651AspHis: 0.651 ± 0.472
4.56AspIle: 4.56 ± 1.322
0.651AspLys: 0.651 ± 0.57
4.56AspLeu: 4.56 ± 2.317
1.303AspMet: 1.303 ± 1.14
4.56AspAsn: 4.56 ± 1.792
0.651AspPro: 0.651 ± 0.75
1.954AspGln: 1.954 ± 0.881
1.303AspArg: 1.303 ± 0.526
3.257AspSer: 3.257 ± 2.256
4.56AspThr: 4.56 ± 1.98
0.0AspVal: 0.0 ± 0.0
1.954AspTrp: 1.954 ± 1.515
5.863AspTyr: 5.863 ± 1.878
0.0AspXaa: 0.0 ± 0.0
Glu
3.909GluAla: 3.909 ± 1.585
1.954GluCys: 1.954 ± 1.243
3.257GluAsp: 3.257 ± 1.889
10.423GluGlu: 10.423 ± 5.005
1.954GluPhe: 1.954 ± 2.368
3.909GluGly: 3.909 ± 1.503
2.606GluHis: 2.606 ± 1.888
6.515GluIle: 6.515 ± 4.191
4.56GluLys: 4.56 ± 1.73
4.56GluLeu: 4.56 ± 2.157
3.257GluMet: 3.257 ± 0.747
9.121GluAsn: 9.121 ± 1.97
0.651GluPro: 0.651 ± 0.472
3.909GluGln: 3.909 ± 1.578
3.257GluArg: 3.257 ± 1.987
3.257GluSer: 3.257 ± 1.173
3.909GluThr: 3.909 ± 3.644
1.954GluVal: 1.954 ± 1.416
5.212GluTrp: 5.212 ± 2.14
5.863GluTyr: 5.863 ± 2.137
0.0GluXaa: 0.0 ± 0.0
Phe
1.954PheAla: 1.954 ± 1.416
0.651PheCys: 0.651 ± 0.472
1.303PheAsp: 1.303 ± 0.853
1.954PheGlu: 1.954 ± 2.196
0.651PhePhe: 0.651 ± 0.472
1.303PheGly: 1.303 ± 0.944
0.0PheHis: 0.0 ± 0.0
0.651PheIle: 0.651 ± 0.472
1.303PheLys: 1.303 ± 0.876
1.303PheLeu: 1.303 ± 1.14
1.303PheMet: 1.303 ± 1.049
1.954PheAsn: 1.954 ± 0.561
0.0PhePro: 0.0 ± 0.0
0.0PheGln: 0.0 ± 0.0
0.651PheArg: 0.651 ± 0.472
0.651PheSer: 0.651 ± 0.472
3.909PheThr: 3.909 ± 1.381
1.954PheVal: 1.954 ± 1.243
1.954PheTrp: 1.954 ± 1.141
1.954PheTyr: 1.954 ± 0.821
0.0PheXaa: 0.0 ± 0.0
Gly
6.515GlyAla: 6.515 ± 3.323
1.954GlyCys: 1.954 ± 1.71
2.606GlyAsp: 2.606 ± 1.288
6.515GlyGlu: 6.515 ± 3.56
1.303GlyPhe: 1.303 ± 0.966
5.212GlyGly: 5.212 ± 2.741
1.303GlyHis: 1.303 ± 0.776
4.56GlyIle: 4.56 ± 1.474
6.515GlyLys: 6.515 ± 2.749
5.212GlyLeu: 5.212 ± 1.233
1.954GlyMet: 1.954 ± 0.923
3.257GlyAsn: 3.257 ± 1.237
1.303GlyPro: 1.303 ± 0.526
3.257GlyGln: 3.257 ± 1.296
0.651GlyArg: 0.651 ± 0.75
5.212GlySer: 5.212 ± 2.354
3.909GlyThr: 3.909 ± 1.06
0.651GlyVal: 0.651 ± 0.472
0.651GlyTrp: 0.651 ± 0.472
3.257GlyTyr: 3.257 ± 1.173
0.0GlyXaa: 0.0 ± 0.0
His
0.651HisAla: 0.651 ± 0.472
0.0HisCys: 0.0 ± 0.0
1.303HisAsp: 1.303 ± 1.052
0.0HisGlu: 0.0 ± 0.0
1.303HisPhe: 1.303 ± 0.944
0.651HisGly: 0.651 ± 0.472
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
1.954HisLys: 1.954 ± 0.99
1.303HisLeu: 1.303 ± 0.944
0.651HisMet: 0.651 ± 0.57
1.954HisAsn: 1.954 ± 0.957
1.954HisPro: 1.954 ± 0.986
0.651HisGln: 0.651 ± 0.472
0.651HisArg: 0.651 ± 0.472
0.651HisSer: 0.651 ± 0.603
0.651HisThr: 0.651 ± 0.472
0.0HisVal: 0.0 ± 0.0
0.651HisTrp: 0.651 ± 0.472
1.303HisTyr: 1.303 ± 0.526
0.0HisXaa: 0.0 ± 0.0
Ile
4.56IleAla: 4.56 ± 1.992
0.651IleCys: 0.651 ± 0.57
5.212IleAsp: 5.212 ± 1.902
7.818IleGlu: 7.818 ± 4.81
0.0IlePhe: 0.0 ± 0.0
2.606IleGly: 2.606 ± 1.553
0.0IleHis: 0.0 ± 0.0
5.212IleIle: 5.212 ± 2.982
8.469IleLys: 8.469 ± 4.256
4.56IleLeu: 4.56 ± 1.792
0.651IleMet: 0.651 ± 1.047
3.257IleAsn: 3.257 ± 1.323
7.166IlePro: 7.166 ± 3.815
3.257IleGln: 3.257 ± 1.127
2.606IleArg: 2.606 ± 1.836
1.303IleSer: 1.303 ± 0.944
3.909IleThr: 3.909 ± 1.981
3.909IleVal: 3.909 ± 1.555
1.954IleTrp: 1.954 ± 0.821
3.909IleTyr: 3.909 ± 1.652
0.0IleXaa: 0.0 ± 0.0
Lys
3.909LysAla: 3.909 ± 1.626
0.651LysCys: 0.651 ± 0.57
3.257LysAsp: 3.257 ± 2.027
3.909LysGlu: 3.909 ± 2.734
0.651LysPhe: 0.651 ± 0.75
6.515LysGly: 6.515 ± 1.577
0.651LysHis: 0.651 ± 1.19
9.121LysIle: 9.121 ± 5.403
7.818LysLys: 7.818 ± 3.166
6.515LysLeu: 6.515 ± 2.307
1.954LysMet: 1.954 ± 1.124
2.606LysAsn: 2.606 ± 1.607
2.606LysPro: 2.606 ± 1.528
1.954LysGln: 1.954 ± 0.957
3.909LysArg: 3.909 ± 1.013
5.212LysSer: 5.212 ± 2.701
5.212LysThr: 5.212 ± 1.137
2.606LysVal: 2.606 ± 0.916
1.303LysTrp: 1.303 ± 0.526
3.909LysTyr: 3.909 ± 1.414
0.0LysXaa: 0.0 ± 0.0
Leu
5.863LeuAla: 5.863 ± 1.991
0.651LeuCys: 0.651 ± 0.846
1.954LeuAsp: 1.954 ± 0.99
3.257LeuGlu: 3.257 ± 1.127
1.954LeuPhe: 1.954 ± 1.416
5.212LeuGly: 5.212 ± 1.69
0.651LeuHis: 0.651 ± 0.472
1.954LeuIle: 1.954 ± 1.124
7.818LeuLys: 7.818 ± 3.041
4.56LeuLeu: 4.56 ± 1.169
2.606LeuMet: 2.606 ± 1.351
3.909LeuAsn: 3.909 ± 0.761
5.863LeuPro: 5.863 ± 2.264
5.212LeuGln: 5.212 ± 1.43
3.909LeuArg: 3.909 ± 1.406
1.303LeuSer: 1.303 ± 0.876
3.257LeuThr: 3.257 ± 1.6
1.303LeuVal: 1.303 ± 0.853
0.651LeuTrp: 0.651 ± 0.472
3.257LeuTyr: 3.257 ± 2.109
0.0LeuXaa: 0.0 ± 0.0
Met
1.954MetAla: 1.954 ± 1.096
0.0MetCys: 0.0 ± 0.0
1.954MetAsp: 1.954 ± 0.789
1.954MetGlu: 1.954 ± 0.821
0.0MetPhe: 0.0 ± 0.0
3.257MetGly: 3.257 ± 1.384
0.0MetHis: 0.0 ± 0.0
1.303MetIle: 1.303 ± 0.966
1.954MetLys: 1.954 ± 1.87
1.303MetLeu: 1.303 ± 0.853
0.651MetMet: 0.651 ± 0.57
3.909MetAsn: 3.909 ± 2.91
1.954MetPro: 1.954 ± 1.028
0.0MetGln: 0.0 ± 0.0
0.0MetArg: 0.0 ± 0.0
2.606MetSer: 2.606 ± 0.924
2.606MetThr: 2.606 ± 1.232
0.651MetVal: 0.651 ± 0.472
0.651MetTrp: 0.651 ± 0.472
0.651MetTyr: 0.651 ± 1.19
0.0MetXaa: 0.0 ± 0.0
Asn
5.863AsnAla: 5.863 ± 1.504
0.651AsnCys: 0.651 ± 0.846
3.909AsnAsp: 3.909 ± 1.374
4.56AsnGlu: 4.56 ± 3.338
1.303AsnPhe: 1.303 ± 0.589
3.909AsnGly: 3.909 ± 0.93
0.651AsnHis: 0.651 ± 1.19
5.863AsnIle: 5.863 ± 1.883
5.863AsnLys: 5.863 ± 2.256
3.909AsnLeu: 3.909 ± 1.388
0.651AsnMet: 0.651 ± 0.472
1.954AsnAsn: 1.954 ± 1.096
1.954AsnPro: 1.954 ± 0.561
3.909AsnGln: 3.909 ± 2.281
1.954AsnArg: 1.954 ± 0.845
6.515AsnSer: 6.515 ± 4.121
4.56AsnThr: 4.56 ± 1.173
1.954AsnVal: 1.954 ± 1.416
1.303AsnTrp: 1.303 ± 1.14
4.56AsnTyr: 4.56 ± 1.582
0.0AsnXaa: 0.0 ± 0.0
Pro
2.606ProAla: 2.606 ± 0.966
0.651ProCys: 0.651 ± 0.57
1.954ProAsp: 1.954 ± 0.694
1.303ProGlu: 1.303 ± 0.526
0.651ProPhe: 0.651 ± 0.57
3.257ProGly: 3.257 ± 1.826
2.606ProHis: 2.606 ± 1.232
4.56ProIle: 4.56 ± 2.592
1.303ProLys: 1.303 ± 1.246
1.954ProLeu: 1.954 ± 1.416
1.303ProMet: 1.303 ± 0.944
0.651ProAsn: 0.651 ± 1.19
1.303ProPro: 1.303 ± 1.14
3.257ProGln: 3.257 ± 1.675
1.303ProArg: 1.303 ± 0.526
1.954ProSer: 1.954 ± 0.821
1.303ProThr: 1.303 ± 0.766
3.257ProVal: 3.257 ± 1.237
0.651ProTrp: 0.651 ± 0.472
1.303ProTyr: 1.303 ± 0.853
0.0ProXaa: 0.0 ± 0.0
Gln
5.212GlnAla: 5.212 ± 2.438
1.303GlnCys: 1.303 ± 1.14
3.257GlnAsp: 3.257 ± 1.228
3.909GlnGlu: 3.909 ± 1.168
1.954GlnPhe: 1.954 ± 1.416
2.606GlnGly: 2.606 ± 1.352
0.0GlnHis: 0.0 ± 0.0
4.56GlnIle: 4.56 ± 1.109
3.257GlnLys: 3.257 ± 1.491
1.954GlnLeu: 1.954 ± 0.561
0.651GlnMet: 0.651 ± 0.472
3.257GlnAsn: 3.257 ± 1.292
0.651GlnPro: 0.651 ± 0.472
1.954GlnGln: 1.954 ± 0.881
2.606GlnArg: 2.606 ± 0.688
3.909GlnSer: 3.909 ± 1.762
3.257GlnThr: 3.257 ± 1.573
1.303GlnVal: 1.303 ± 0.944
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.954ArgAla: 1.954 ± 1.141
0.651ArgCys: 0.651 ± 0.57
1.303ArgAsp: 1.303 ± 1.052
2.606ArgGlu: 2.606 ± 1.04
0.0ArgPhe: 0.0 ± 0.0
1.303ArgGly: 1.303 ± 0.876
0.651ArgHis: 0.651 ± 0.75
3.909ArgIle: 3.909 ± 1.155
3.257ArgLys: 3.257 ± 1.556
2.606ArgLeu: 2.606 ± 1.052
1.954ArgMet: 1.954 ± 0.789
1.303ArgAsn: 1.303 ± 0.876
1.303ArgPro: 1.303 ± 0.526
0.651ArgGln: 0.651 ± 0.472
1.303ArgArg: 1.303 ± 1.14
4.56ArgSer: 4.56 ± 1.543
4.56ArgThr: 4.56 ± 1.408
0.651ArgVal: 0.651 ± 0.472
0.651ArgTrp: 0.651 ± 0.57
2.606ArgTyr: 2.606 ± 1.052
0.0ArgXaa: 0.0 ± 0.0
Ser
4.56SerAla: 4.56 ± 1.558
1.303SerCys: 1.303 ± 0.876
3.257SerAsp: 3.257 ± 1.038
7.818SerGlu: 7.818 ± 3.076
0.651SerPhe: 0.651 ± 0.472
6.515SerGly: 6.515 ± 2.683
0.651SerHis: 0.651 ± 0.603
1.303SerIle: 1.303 ± 0.915
3.909SerLys: 3.909 ± 0.954
6.515SerLeu: 6.515 ± 1.434
1.954SerMet: 1.954 ± 1.084
4.56SerAsn: 4.56 ± 2.757
0.651SerPro: 0.651 ± 0.472
0.651SerGln: 0.651 ± 0.603
5.212SerArg: 5.212 ± 2.137
16.287SerSer: 16.287 ± 11.281
6.515SerThr: 6.515 ± 2.984
1.954SerVal: 1.954 ± 0.881
1.954SerTrp: 1.954 ± 1.81
1.303SerTyr: 1.303 ± 0.589
0.0SerXaa: 0.0 ± 0.0
Thr
1.954ThrAla: 1.954 ± 0.561
0.0ThrCys: 0.0 ± 0.0
3.909ThrAsp: 3.909 ± 1.555
7.166ThrGlu: 7.166 ± 1.128
1.303ThrPhe: 1.303 ± 0.526
7.166ThrGly: 7.166 ± 1.913
1.303ThrHis: 1.303 ± 0.526
5.212ThrIle: 5.212 ± 1.504
3.909ThrLys: 3.909 ± 1.013
3.909ThrLeu: 3.909 ± 1.371
1.954ThrMet: 1.954 ± 1.603
3.909ThrAsn: 3.909 ± 2.3
4.56ThrPro: 4.56 ± 1.283
1.954ThrGln: 1.954 ± 0.561
1.954ThrArg: 1.954 ± 1.416
4.56ThrSer: 4.56 ± 1.775
4.56ThrThr: 4.56 ± 1.54
1.954ThrVal: 1.954 ± 1.416
1.954ThrTrp: 1.954 ± 0.986
3.909ThrTyr: 3.909 ± 1.348
0.0ThrXaa: 0.0 ± 0.0
Val
1.954ValAla: 1.954 ± 0.821
0.0ValCys: 0.0 ± 0.0
0.651ValAsp: 0.651 ± 0.472
1.303ValGlu: 1.303 ± 1.499
0.651ValPhe: 0.651 ± 0.472
1.303ValGly: 1.303 ± 1.052
0.0ValHis: 0.0 ± 0.0
0.651ValIle: 0.651 ± 0.57
1.303ValLys: 1.303 ± 0.944
2.606ValLeu: 2.606 ± 0.688
1.303ValMet: 1.303 ± 1.052
3.257ValAsn: 3.257 ± 1.826
1.954ValPro: 1.954 ± 0.821
3.257ValGln: 3.257 ± 0.905
1.303ValArg: 1.303 ± 0.944
3.257ValSer: 3.257 ± 1.724
1.954ValThr: 1.954 ± 1.416
1.303ValVal: 1.303 ± 0.526
0.651ValTrp: 0.651 ± 0.472
3.257ValTyr: 3.257 ± 1.826
0.0ValXaa: 0.0 ± 0.0
Trp
1.303TrpAla: 1.303 ± 0.853
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
4.56TrpGlu: 4.56 ± 1.325
1.303TrpPhe: 1.303 ± 0.526
2.606TrpGly: 2.606 ± 0.916
0.651TrpHis: 0.651 ± 0.472
1.954TrpIle: 1.954 ± 1.416
1.303TrpLys: 1.303 ± 1.246
1.303TrpLeu: 1.303 ± 1.499
0.0TrpMet: 0.0 ± 0.0
2.606TrpAsn: 2.606 ± 1.04
0.0TrpPro: 0.0 ± 0.0
1.303TrpGln: 1.303 ± 0.776
0.0TrpArg: 0.0 ± 0.0
2.606TrpSer: 2.606 ± 1.179
0.651TrpThr: 0.651 ± 0.472
0.651TrpVal: 0.651 ± 1.19
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.56TyrAla: 4.56 ± 1.389
1.303TyrCys: 1.303 ± 0.526
1.954TyrAsp: 1.954 ± 0.694
3.909TyrGlu: 3.909 ± 2.017
1.954TyrPhe: 1.954 ± 0.821
2.606TyrGly: 2.606 ± 1.828
1.954TyrHis: 1.954 ± 0.99
3.257TyrIle: 3.257 ± 0.978
3.909TyrLys: 3.909 ± 1.536
2.606TyrLeu: 2.606 ± 1.052
1.303TyrMet: 1.303 ± 0.589
3.909TyrAsn: 3.909 ± 1.901
1.954TyrPro: 1.954 ± 0.986
3.257TyrGln: 3.257 ± 1.0
1.954TyrArg: 1.954 ± 1.021
5.212TyrSer: 5.212 ± 1.417
3.909TyrThr: 3.909 ± 1.155
1.954TyrVal: 1.954 ± 0.821
0.0TyrTrp: 0.0 ± 0.0
3.909TyrTyr: 3.909 ± 1.291
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1536 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski