Cladophialophora yegresii CBS 114405

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Cladophialophora; Cladophialophora yegresii

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W9VYD8|W9VYD8_9EURO Uncharacterized protein OS=Cladophialophora yegresii CBS 114405 OX=1182544 GN=A1O7_07613 PE=3 SV=1
MM1 pKa = 7.51KK2 pKa = 10.28NALSKK7 pKa = 10.97AFPATAAVVALLSGQAHH24 pKa = 6.1AQDD27 pKa = 4.59DD28 pKa = 4.21SGSTVINVFWITEE41 pKa = 4.2TTLSLNSINQYY52 pKa = 10.05PLAASIVTADD62 pKa = 3.31SSSTVVAVEE71 pKa = 4.11CAGPSIDD78 pKa = 3.47TSVCGTEE85 pKa = 4.18AQTITYY91 pKa = 10.32GSTTWVASEE100 pKa = 4.13TTGNLGVTMQCSIAQNSEE118 pKa = 4.13SAVCTGEE125 pKa = 3.49IDD127 pKa = 4.3APEE130 pKa = 3.96QIINDD135 pKa = 3.97PLINSSEE142 pKa = 3.95ASEE145 pKa = 4.89LLTATTVDD153 pKa = 3.83VLSTAYY159 pKa = 10.5SGTLSSTDD167 pKa = 3.81FTFLPITVTAGQEE180 pKa = 3.98KK181 pKa = 10.23LAGGSRR187 pKa = 11.84AADD190 pKa = 3.52SSSSSSSSGADD201 pKa = 3.0GNANANGAGSFKK213 pKa = 11.18SNLGLSGWMAGFLGLVMMVLL233 pKa = 4.03

Molecular weight: 23.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W9WJX5|W9WJX5_9EURO RNA_pol_L_2 domain-containing protein OS=Cladophialophora yegresii CBS 114405 OX=1182544 GN=A1O7_01235 PE=3 SV=1
MM1 pKa = 7.68AFGRR5 pKa = 11.84SRR7 pKa = 11.84ARR9 pKa = 11.84HH10 pKa = 5.1HH11 pKa = 7.01AGGATVTTTVTTVEE25 pKa = 4.26QPAPATRR32 pKa = 11.84SRR34 pKa = 11.84GTRR37 pKa = 11.84GTRR40 pKa = 11.84AAGTKK45 pKa = 7.27PTLRR49 pKa = 11.84QRR51 pKa = 11.84LFGPPKK57 pKa = 9.35TRR59 pKa = 11.84TPRR62 pKa = 11.84TTTAAPPRR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84RR73 pKa = 11.84VGTRR77 pKa = 11.84RR78 pKa = 11.84TPATATTTVTPRR90 pKa = 11.84RR91 pKa = 11.84KK92 pKa = 10.18ASMSDD97 pKa = 3.25KK98 pKa = 10.95VSGAMLKK105 pKa = 10.74LKK107 pKa = 10.67GSLTRR112 pKa = 11.84RR113 pKa = 11.84PGQKK117 pKa = 9.9AAGTRR122 pKa = 11.84RR123 pKa = 11.84MHH125 pKa = 5.68GTDD128 pKa = 2.9GRR130 pKa = 11.84GSRR133 pKa = 11.84RR134 pKa = 11.84YY135 pKa = 9.15YY136 pKa = 10.95

Molecular weight: 14.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10118

0

10118

4906581

43

6549

484.9

53.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.929 ± 0.019

1.144 ± 0.009

5.78 ± 0.016

6.148 ± 0.025

3.637 ± 0.015

6.941 ± 0.023

2.458 ± 0.01

4.671 ± 0.016

4.795 ± 0.021

8.858 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.151 ± 0.009

3.524 ± 0.011

6.133 ± 0.025

4.172 ± 0.017

6.258 ± 0.024

8.01 ± 0.025

6.031 ± 0.018

6.219 ± 0.018

1.434 ± 0.009

2.706 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski