Yoonia tamlensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Yoonia

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3187 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I6HAJ4|A0A1I6HAJ4_9RHOB Putative peptidoglycan binding domain-containing protein OS=Yoonia tamlensis OX=390270 GN=SAMN04488005_2429 PE=4 SV=1
MM1 pKa = 7.2QFLNIRR7 pKa = 11.84SGALAVAMLGAAAPAVAQDD26 pKa = 4.48TYY28 pKa = 11.49CGGAGNGGQWIGGDD42 pKa = 3.62AQSSDD47 pKa = 2.79IATAGSYY54 pKa = 9.04QEE56 pKa = 4.45QMALVLGGNEE66 pKa = 4.21YY67 pKa = 10.4ISLFSLSQGTDD78 pKa = 3.04VRR80 pKa = 11.84IEE82 pKa = 3.79AAGRR86 pKa = 11.84GAGDD90 pKa = 3.85TIIDD94 pKa = 3.83VLDD97 pKa = 3.98SNGSIVASDD106 pKa = 4.27DD107 pKa = 3.88DD108 pKa = 4.38SGGNAASRR116 pKa = 11.84AEE118 pKa = 4.3TYY120 pKa = 10.87LEE122 pKa = 4.11AGTYY126 pKa = 10.45CMALRR131 pKa = 11.84SYY133 pKa = 11.27DD134 pKa = 4.11GGPMTAFVRR143 pKa = 11.84VGRR146 pKa = 11.84QEE148 pKa = 4.69HH149 pKa = 5.78EE150 pKa = 4.01ALTEE154 pKa = 4.02GVMDD158 pKa = 4.12SPVNDD163 pKa = 4.32GSAGGCATATPMGGLGSSVTGSVADD188 pKa = 3.66NPNWSFTLDD197 pKa = 3.25APAQISITAEE207 pKa = 3.89NEE209 pKa = 3.83SADD212 pKa = 3.85PVVTLYY218 pKa = 10.79GANDD222 pKa = 3.36MFIAEE227 pKa = 4.23NDD229 pKa = 4.02DD230 pKa = 3.72YY231 pKa = 11.92DD232 pKa = 4.15GLNSRR237 pKa = 11.84IDD239 pKa = 3.48VTDD242 pKa = 3.27TLDD245 pKa = 3.72PGTYY249 pKa = 9.25CIAMAALSDD258 pKa = 4.07EE259 pKa = 4.45YY260 pKa = 11.76APITVSLTEE269 pKa = 4.28YY270 pKa = 10.69DD271 pKa = 3.81PEE273 pKa = 5.26AATLSLYY280 pKa = 10.76DD281 pKa = 4.05RR282 pKa = 11.84GEE284 pKa = 4.05AAPPLDD290 pKa = 3.38GSIPVTDD297 pKa = 4.46LGVLEE302 pKa = 4.28SRR304 pKa = 11.84VRR306 pKa = 11.84QDD308 pKa = 2.85VQATDD313 pKa = 3.34DD314 pKa = 4.05VTWFTLEE321 pKa = 3.99VLDD324 pKa = 5.02NSLLVIEE331 pKa = 5.58AIGGGNSDD339 pKa = 3.6PWLVVYY345 pKa = 10.62DD346 pKa = 3.91DD347 pKa = 4.61LGRR350 pKa = 11.84EE351 pKa = 3.83VGMNDD356 pKa = 4.42DD357 pKa = 4.47YY358 pKa = 11.99GDD360 pKa = 4.2GLDD363 pKa = 3.81SLVMARR369 pKa = 11.84VQSGTYY375 pKa = 9.44IVGVRR380 pKa = 11.84QFDD383 pKa = 3.6NTAGLIRR390 pKa = 11.84LLAEE394 pKa = 4.12RR395 pKa = 11.84YY396 pKa = 9.25VRR398 pKa = 11.84AQQ400 pKa = 2.93

Molecular weight: 41.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I6FQ09|A0A1I6FQ09_9RHOB Nucleobase:cation symporter-2 NCS2 family OS=Yoonia tamlensis OX=390270 GN=SAMN04488005_0233 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84VRR12 pKa = 11.84KK13 pKa = 8.99NRR15 pKa = 11.84HH16 pKa = 3.77GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.53ILNNRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.47GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3187

0

3187

974354

31

2420

305.7

33.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.616 ± 0.066

0.933 ± 0.012

6.339 ± 0.03

5.022 ± 0.042

3.856 ± 0.031

8.434 ± 0.04

2.074 ± 0.025

5.76 ± 0.033

3.32 ± 0.039

9.665 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.868 ± 0.023

2.946 ± 0.023

4.86 ± 0.03

3.554 ± 0.024

6.003 ± 0.041

5.001 ± 0.031

5.813 ± 0.036

7.257 ± 0.035

1.344 ± 0.016

2.336 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski