Vibrio phage ValSw4_1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 107 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A411BJV6|A0A411BJV6_9CAUD Uncharacterized protein OS=Vibrio phage ValSw4_1 OX=2484246 GN=ValSw41_84 PE=4 SV=1
MM1 pKa = 7.38EE2 pKa = 5.0NVVNTLVVDD11 pKa = 4.28FTNPSAISDD20 pKa = 3.87GAILMLEE27 pKa = 3.93YY28 pKa = 10.47DD29 pKa = 3.82ARR31 pKa = 11.84EE32 pKa = 4.14AADD35 pKa = 3.57GGLNARR41 pKa = 11.84STPYY45 pKa = 10.78LNEE48 pKa = 3.64SCYY51 pKa = 11.06LLLSGYY57 pKa = 10.89GLTNFNITASSGLAVFNSGVKK78 pKa = 9.32YY79 pKa = 10.15RR80 pKa = 11.84QVTEE84 pKa = 3.86TVIFDD89 pKa = 3.87GSDD92 pKa = 3.18TGSLRR97 pKa = 11.84LPATRR102 pKa = 11.84LISYY106 pKa = 8.58SWQGSDD112 pKa = 4.89GGALSLDD119 pKa = 3.75DD120 pKa = 3.56QVLRR124 pKa = 11.84ISNEE128 pKa = 3.66GNFVVSVTYY137 pKa = 10.1EE138 pKa = 3.58SSYY141 pKa = 11.63YY142 pKa = 9.91EE143 pKa = 4.03IKK145 pKa = 9.86LTPPEE150 pKa = 4.88LDD152 pKa = 3.68PDD154 pKa = 4.16TVDD157 pKa = 3.4EE158 pKa = 4.21YY159 pKa = 10.58TINVIVSAEE168 pKa = 4.13VIQQ171 pKa = 4.16

Molecular weight: 18.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A411BJU0|A0A411BJU0_9CAUD Uncharacterized protein OS=Vibrio phage ValSw4_1 OX=2484246 GN=ValSw41_69 PE=4 SV=1
MM1 pKa = 7.34AVKK4 pKa = 10.5DD5 pKa = 4.31KK6 pKa = 10.05FSKK9 pKa = 10.23MILRR13 pKa = 11.84NGRR16 pKa = 11.84VFHH19 pKa = 7.02IAVTHH24 pKa = 6.37DD25 pKa = 3.38NRR27 pKa = 11.84DD28 pKa = 3.38VEE30 pKa = 4.38TLIQVRR36 pKa = 11.84DD37 pKa = 3.72QNNEE41 pKa = 3.62LLATAKK47 pKa = 10.06VCRR50 pKa = 11.84LFYY53 pKa = 9.78FTFEE57 pKa = 3.81IYY59 pKa = 10.51RR60 pKa = 11.84NGKK63 pKa = 5.25TNRR66 pKa = 11.84GKK68 pKa = 10.52RR69 pKa = 11.84RR70 pKa = 11.84LSKK73 pKa = 9.0FTPDD77 pKa = 3.19KK78 pKa = 10.3EE79 pKa = 3.9PRR81 pKa = 11.84YY82 pKa = 10.15YY83 pKa = 9.75STPVAAWLVDD93 pKa = 3.17HH94 pKa = 7.12HH95 pKa = 6.88APKK98 pKa = 10.76LKK100 pKa = 10.68

Molecular weight: 11.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

107

0

107

23644

58

1379

221.0

24.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.061 ± 0.358

1.155 ± 0.119

6.441 ± 0.151

6.881 ± 0.233

3.667 ± 0.131

6.099 ± 0.169

2.017 ± 0.15

6.099 ± 0.223

6.75 ± 0.319

9.165 ± 0.218

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.318 ± 0.098

5.134 ± 0.177

3.87 ± 0.16

3.502 ± 0.175

5.376 ± 0.201

6.247 ± 0.215

6.213 ± 0.124

6.492 ± 0.223

0.791 ± 0.078

3.722 ± 0.18
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski