Changjiang tombus-like virus 19

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 8.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KFZ9|A0A1L3KFZ9_9VIRU Uncharacterized protein OS=Changjiang tombus-like virus 19 OX=1922812 PE=4 SV=1
MM1 pKa = 7.48VEE3 pKa = 4.0QRR5 pKa = 11.84PHH7 pKa = 5.87ICYY10 pKa = 10.45GNCFHH15 pKa = 7.21NVVRR19 pKa = 11.84SFNGRR24 pKa = 11.84YY25 pKa = 8.03FKK27 pKa = 10.53PSPRR31 pKa = 11.84PRR33 pKa = 11.84RR34 pKa = 11.84GDD36 pKa = 3.33IDD38 pKa = 3.06WGLVHH43 pKa = 7.25KK44 pKa = 10.65IVDD47 pKa = 4.02DD48 pKa = 4.17LSDD51 pKa = 4.95RR52 pKa = 11.84IIKK55 pKa = 10.02NAICDD60 pKa = 3.46NDD62 pKa = 4.13GPNEE66 pKa = 4.14SQKK69 pKa = 9.87TGYY72 pKa = 10.19LFNAGKK78 pKa = 10.31GGVMNFINDD87 pKa = 3.42APGKK91 pKa = 8.96NKK93 pKa = 9.58RR94 pKa = 11.84RR95 pKa = 11.84YY96 pKa = 9.56RR97 pKa = 11.84SALDD101 pKa = 3.29QILAKK106 pKa = 10.71GFTPLKK112 pKa = 8.69HH113 pKa = 6.41SRR115 pKa = 11.84MSVFVKK121 pKa = 10.44RR122 pKa = 11.84EE123 pKa = 3.77SFYY126 pKa = 11.4KK127 pKa = 10.16EE128 pKa = 3.52GKK130 pKa = 9.87APRR133 pKa = 11.84LIMGRR138 pKa = 11.84DD139 pKa = 3.3PRR141 pKa = 11.84FALFYY146 pKa = 9.43NTVIEE151 pKa = 4.62PFDD154 pKa = 3.67KK155 pKa = 10.95PFFNLPQCTYY165 pKa = 10.63NDD167 pKa = 3.79NYY169 pKa = 11.43DD170 pKa = 3.79SLGHH174 pKa = 6.72KK175 pKa = 10.21FGEE178 pKa = 4.9LVGQWFCEE186 pKa = 3.92NDD188 pKa = 3.3FSQCEE193 pKa = 4.17SSIQPFWLDD202 pKa = 3.3LQLRR206 pKa = 11.84CMNKK210 pKa = 8.82VLTAIKK216 pKa = 9.93QQANLKK222 pKa = 8.0MAWAMKK228 pKa = 9.54IVKK231 pKa = 9.78DD232 pKa = 4.13GQWRR236 pKa = 11.84EE237 pKa = 3.84YY238 pKa = 9.66ITFKK242 pKa = 10.82FQEE245 pKa = 4.57CTGSGDD251 pKa = 4.11RR252 pKa = 11.84DD253 pKa = 3.52TSSLNGFVNWVSSRR267 pKa = 11.84YY268 pKa = 9.43FLIKK272 pKa = 10.55NIEE275 pKa = 4.24PNCKK279 pKa = 9.83VSSDD283 pKa = 3.91CAGCSTDD290 pKa = 4.75KK291 pKa = 10.99FLLKK295 pKa = 10.71GDD297 pKa = 4.3DD298 pKa = 4.16NVMRR302 pKa = 11.84WPRR305 pKa = 11.84GVTEE309 pKa = 4.88FKK311 pKa = 9.88NTYY314 pKa = 8.02TLFGLDD320 pKa = 2.99AKK322 pKa = 10.86LIIRR326 pKa = 11.84KK327 pKa = 7.43TPEE330 pKa = 3.63EE331 pKa = 4.12VEE333 pKa = 4.33FCSGHH338 pKa = 6.43FIEE341 pKa = 4.96TTPGNYY347 pKa = 10.1LYY349 pKa = 10.58VQKK352 pKa = 10.45LVKK355 pKa = 10.6LIDD358 pKa = 3.48SLQRR362 pKa = 11.84CLNSDD367 pKa = 3.35ALKK370 pKa = 10.55RR371 pKa = 11.84GWVAQYY377 pKa = 10.47YY378 pKa = 10.14KK379 pKa = 10.87SLGLMYY385 pKa = 10.4KK386 pKa = 9.94VLYY389 pKa = 10.17RR390 pKa = 11.84DD391 pKa = 3.07IPVYY395 pKa = 10.7SEE397 pKa = 3.55IAEE400 pKa = 4.18FLLNTNFDD408 pKa = 3.58GGINANLINSWNLTNSFKK426 pKa = 11.02QSDD429 pKa = 4.08GCVRR433 pKa = 11.84RR434 pKa = 11.84VDD436 pKa = 3.51QSLCEE441 pKa = 4.25LSVAMANGLSIPEE454 pKa = 4.01VEE456 pKa = 5.3RR457 pKa = 11.84IKK459 pKa = 11.16DD460 pKa = 3.52WFSTNALHH468 pKa = 7.16FPASMTKK475 pKa = 9.69RR476 pKa = 11.84CNLRR480 pKa = 11.84ACKK483 pKa = 7.39TTPKK487 pKa = 8.96VTEE490 pKa = 4.0VEE492 pKa = 3.98QEE494 pKa = 3.86IFNSCFANAWDD505 pKa = 4.35TLTKK509 pKa = 10.35DD510 pKa = 3.64KK511 pKa = 11.05RR512 pKa = 11.84FAKK515 pKa = 10.24IKK517 pKa = 9.4QRR519 pKa = 11.84YY520 pKa = 7.8NRR522 pKa = 11.84VLKK525 pKa = 10.81GG526 pKa = 3.24

Molecular weight: 60.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KFZ9|A0A1L3KFZ9_9VIRU Uncharacterized protein OS=Changjiang tombus-like virus 19 OX=1922812 PE=4 SV=1
MM1 pKa = 7.87SDD3 pKa = 3.65QNVQTPRR10 pKa = 11.84NRR12 pKa = 11.84GGRR15 pKa = 11.84QRR17 pKa = 11.84PAQQNRR23 pKa = 11.84QHH25 pKa = 6.23LQQVVNTQHH34 pKa = 7.64RR35 pKa = 11.84IYY37 pKa = 10.64QFTKK41 pKa = 10.14VYY43 pKa = 9.13TAALDD48 pKa = 3.35KK49 pKa = 11.16GFKK52 pKa = 10.17DD53 pKa = 3.35RR54 pKa = 11.84AALNTFTTWVNANIASIDD72 pKa = 3.59PASIRR77 pKa = 11.84VCNEE81 pKa = 3.64CGSSDD86 pKa = 6.16LIPCDD91 pKa = 3.65HH92 pKa = 7.27FIVPAAPNAVVVNAHH107 pKa = 5.88QYY109 pKa = 9.06FAVPAGPTNFRR120 pKa = 11.84RR121 pKa = 11.84RR122 pKa = 11.84FMWVGGIRR130 pKa = 11.84RR131 pKa = 11.84MFTWPSYY138 pKa = 10.58DD139 pKa = 3.21ASINNNHH146 pKa = 6.28NLGGFHH152 pKa = 7.23NSDD155 pKa = 3.48IDD157 pKa = 3.97DD158 pKa = 3.76NMIIDD163 pKa = 3.69EE164 pKa = 4.58MYY166 pKa = 11.05NYY168 pKa = 9.69IQLNMCTSYY177 pKa = 11.08LINGSVDD184 pKa = 2.7RR185 pKa = 11.84RR186 pKa = 11.84ARR188 pKa = 11.84LEE190 pKa = 4.2HH191 pKa = 5.86CHH193 pKa = 6.72KK194 pKa = 10.68LALKK198 pKa = 9.86YY199 pKa = 10.64CEE201 pKa = 4.12EE202 pKa = 4.17HH203 pKa = 6.78SLRR206 pKa = 11.84NPDD209 pKa = 3.37PTTTHH214 pKa = 7.72AIQNTIQRR222 pKa = 11.84ACDD225 pKa = 3.29NAEE228 pKa = 3.43NDD230 pKa = 3.51MLYY233 pKa = 10.84EE234 pKa = 4.16RR235 pKa = 11.84TNPTHH240 pKa = 6.73NLLNPYY246 pKa = 10.23ALLDD250 pKa = 3.78GVVNGVKK257 pKa = 10.38YY258 pKa = 10.59CLNATARR265 pKa = 11.84GIVHH269 pKa = 6.11MRR271 pKa = 11.84HH272 pKa = 6.41PIIAGVITVMVFRR285 pKa = 11.84NARR288 pKa = 11.84WLQSLTWRR296 pKa = 11.84FLYY299 pKa = 10.71APAGRR304 pKa = 11.84MVINSALSAMEE315 pKa = 3.79TTRR318 pKa = 11.84QIMRR322 pKa = 11.84GSAVHH327 pKa = 6.78LNNLANWILNVSGAMRR343 pKa = 11.84TSYY346 pKa = 10.82CAGSVMQWLNNGRR359 pKa = 11.84TFATEE364 pKa = 4.17TVSTMSSGVSMDD376 pKa = 5.15DD377 pKa = 2.63ILSRR381 pKa = 11.84VRR383 pKa = 11.84ALDD386 pKa = 3.47AVII389 pKa = 4.69

Molecular weight: 43.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

915

389

526

457.5

52.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.667 ± 1.594

2.951 ± 0.392

5.574 ± 0.425

3.607 ± 0.796

5.027 ± 1.196

5.792 ± 0.401

2.295 ± 0.803

5.683 ± 0.3

5.246 ± 2.281

7.65 ± 0.437

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.951 ± 0.716

8.197 ± 0.81

3.934 ± 0.048

3.934 ± 0.268

6.995 ± 0.6

6.23 ± 0.195

5.464 ± 0.751

6.339 ± 0.529

1.967 ± 0.103

3.497 ± 0.096
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski