Amino acid dipepetide frequency for Streptomyces sp. NRRL S-495

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
24.426AlaAla: 24.426 ± 0.179
1.001AlaCys: 1.001 ± 0.025
8.857AlaAsp: 8.857 ± 0.078
9.645AlaGlu: 9.645 ± 0.104
3.677AlaPhe: 3.677 ± 0.049
14.58AlaGly: 14.58 ± 0.094
2.814AlaHis: 2.814 ± 0.042
3.212AlaIle: 3.212 ± 0.041
2.552AlaLys: 2.552 ± 0.052
15.398AlaLeu: 15.398 ± 0.123
2.336AlaMet: 2.336 ± 0.035
2.005AlaAsn: 2.005 ± 0.035
7.974AlaPro: 7.974 ± 0.083
3.533AlaGln: 3.533 ± 0.049
10.46AlaArg: 10.46 ± 0.081
5.377AlaSer: 5.377 ± 0.06
7.485AlaThr: 7.485 ± 0.064
13.382AlaVal: 13.382 ± 0.108
1.907AlaTrp: 1.907 ± 0.031
2.459AlaTyr: 2.459 ± 0.035
0.001AlaXaa: 0.001 ± 0.001
Cys
1.036CysAla: 1.036 ± 0.023
0.091CysCys: 0.091 ± 0.007
0.412CysAsp: 0.412 ± 0.014
0.372CysGlu: 0.372 ± 0.012
0.221CysPhe: 0.221 ± 0.011
0.897CysGly: 0.897 ± 0.021
0.193CysHis: 0.193 ± 0.01
0.151CysIle: 0.151 ± 0.008
0.09CysLys: 0.09 ± 0.007
0.789CysLeu: 0.789 ± 0.02
0.103CysMet: 0.103 ± 0.007
0.134CysAsn: 0.134 ± 0.008
0.494CysPro: 0.494 ± 0.016
0.168CysGln: 0.168 ± 0.009
0.586CysArg: 0.586 ± 0.018
0.437CysSer: 0.437 ± 0.016
0.506CysThr: 0.506 ± 0.016
0.563CysVal: 0.563 ± 0.015
0.124CysTrp: 0.124 ± 0.008
0.158CysTyr: 0.158 ± 0.008
0.0CysXaa: 0.0 ± 0.0
Asp
7.378AspAla: 7.378 ± 0.061
0.44AspCys: 0.44 ± 0.016
2.955AspAsp: 2.955 ± 0.037
3.508AspGlu: 3.508 ± 0.047
1.626AspPhe: 1.626 ± 0.032
6.733AspGly: 6.733 ± 0.069
1.426AspHis: 1.426 ± 0.027
1.68AspIle: 1.68 ± 0.031
0.95AspLys: 0.95 ± 0.026
6.514AspLeu: 6.514 ± 0.067
0.636AspMet: 0.636 ± 0.019
0.945AspAsn: 0.945 ± 0.025
4.802AspPro: 4.802 ± 0.059
1.504AspGln: 1.504 ± 0.027
5.397AspArg: 5.397 ± 0.052
2.333AspSer: 2.333 ± 0.038
3.156AspThr: 3.156 ± 0.04
4.057AspVal: 4.057 ± 0.043
1.059AspTrp: 1.059 ± 0.023
1.156AspTyr: 1.156 ± 0.021
0.001AspXaa: 0.001 ± 0.001
Glu
7.352GluAla: 7.352 ± 0.074
0.339GluCys: 0.339 ± 0.012
2.745GluAsp: 2.745 ± 0.036
3.422GluGlu: 3.422 ± 0.05
1.495GluPhe: 1.495 ± 0.028
4.124GluGly: 4.124 ± 0.049
1.563GluHis: 1.563 ± 0.03
1.975GluIle: 1.975 ± 0.03
1.115GluLys: 1.115 ± 0.03
7.421GluLeu: 7.421 ± 0.082
0.718GluMet: 0.718 ± 0.02
0.949GluAsn: 0.949 ± 0.025
3.4GluPro: 3.4 ± 0.044
2.358GluGln: 2.358 ± 0.035
5.432GluArg: 5.432 ± 0.055
2.358GluSer: 2.358 ± 0.036
2.499GluThr: 2.499 ± 0.039
4.671GluVal: 4.671 ± 0.055
0.732GluTrp: 0.732 ± 0.016
1.087GluTyr: 1.087 ± 0.025
0.0GluXaa: 0.0 ± 0.0
Phe
3.784PheAla: 3.784 ± 0.049
0.261PheCys: 0.261 ± 0.01
1.98PheAsp: 1.98 ± 0.033
1.435PheGlu: 1.435 ± 0.027
0.8PhePhe: 0.8 ± 0.023
3.072PheGly: 3.072 ± 0.042
0.618PheHis: 0.618 ± 0.016
0.606PheIle: 0.606 ± 0.019
0.447PheLys: 0.447 ± 0.016
2.625PheLeu: 2.625 ± 0.04
0.354PheMet: 0.354 ± 0.012
0.543PheAsn: 0.543 ± 0.018
1.448PhePro: 1.448 ± 0.028
0.693PheGln: 0.693 ± 0.018
1.875PheArg: 1.875 ± 0.033
1.359PheSer: 1.359 ± 0.026
1.992PheThr: 1.992 ± 0.03
2.176PheVal: 2.176 ± 0.034
0.422PheTrp: 0.422 ± 0.014
0.561PheTyr: 0.561 ± 0.016
0.0PheXaa: 0.0 ± 0.001
Gly
12.073GlyAla: 12.073 ± 0.078
0.813GlyCys: 0.813 ± 0.021
4.854GlyAsp: 4.854 ± 0.044
5.136GlyGlu: 5.136 ± 0.052
2.895GlyPhe: 2.895 ± 0.037
9.417GlyGly: 9.417 ± 0.095
2.379GlyHis: 2.379 ± 0.032
3.278GlyIle: 3.278 ± 0.044
2.085GlyLys: 2.085 ± 0.044
10.422GlyLeu: 10.422 ± 0.087
1.825GlyMet: 1.825 ± 0.03
1.771GlyAsn: 1.771 ± 0.038
6.091GlyPro: 6.091 ± 0.063
2.67GlyGln: 2.67 ± 0.034
8.481GlyArg: 8.481 ± 0.082
5.446GlySer: 5.446 ± 0.057
6.671GlyThr: 6.671 ± 0.065
7.467GlyVal: 7.467 ± 0.063
1.8GlyTrp: 1.8 ± 0.03
2.307GlyTyr: 2.307 ± 0.034
0.001GlyXaa: 0.001 ± 0.001
His
2.566HisAla: 2.566 ± 0.036
0.229HisCys: 0.229 ± 0.012
1.224HisAsp: 1.224 ± 0.027
1.124HisGlu: 1.124 ± 0.023
0.589HisPhe: 0.589 ± 0.016
2.409HisGly: 2.409 ± 0.032
0.721HisHis: 0.721 ± 0.022
0.581HisIle: 0.581 ± 0.016
0.269HisLys: 0.269 ± 0.012
2.604HisLeu: 2.604 ± 0.039
0.284HisMet: 0.284 ± 0.013
0.376HisAsn: 0.376 ± 0.014
1.88HisPro: 1.88 ± 0.031
0.657HisGln: 0.657 ± 0.018
2.302HisArg: 2.302 ± 0.041
0.951HisSer: 0.951 ± 0.021
1.205HisThr: 1.205 ± 0.021
1.467HisVal: 1.467 ± 0.028
0.416HisTrp: 0.416 ± 0.013
0.47HisTyr: 0.47 ± 0.016
0.0HisXaa: 0.0 ± 0.0
Ile
4.503IleAla: 4.503 ± 0.049
0.278IleCys: 0.278 ± 0.012
2.048IleAsp: 2.048 ± 0.037
1.785IleGlu: 1.785 ± 0.032
0.589IlePhe: 0.589 ± 0.018
3.577IleGly: 3.577 ± 0.041
0.569IleHis: 0.569 ± 0.017
0.674IleIle: 0.674 ± 0.022
0.64IleLys: 0.64 ± 0.02
2.128IleLeu: 2.128 ± 0.038
0.378IleMet: 0.378 ± 0.014
0.628IleAsn: 0.628 ± 0.019
1.547IlePro: 1.547 ± 0.032
0.63IleGln: 0.63 ± 0.017
2.028IleArg: 2.028 ± 0.03
1.489IleSer: 1.489 ± 0.032
2.098IleThr: 2.098 ± 0.033
2.404IleVal: 2.404 ± 0.039
0.361IleTrp: 0.361 ± 0.013
0.445IleTyr: 0.445 ± 0.015
0.0IleXaa: 0.0 ± 0.0
Lys
2.528LysAla: 2.528 ± 0.05
0.091LysCys: 0.091 ± 0.007
1.124LysAsp: 1.124 ± 0.031
0.931LysGlu: 0.931 ± 0.027
0.397LysPhe: 0.397 ± 0.013
1.502LysGly: 1.502 ± 0.034
0.411LysHis: 0.411 ± 0.012
0.67LysIle: 0.67 ± 0.02
0.569LysLys: 0.569 ± 0.025
1.787LysLeu: 1.787 ± 0.036
0.305LysMet: 0.305 ± 0.011
0.447LysAsn: 0.447 ± 0.019
1.116LysPro: 1.116 ± 0.028
0.64LysGln: 0.64 ± 0.018
1.162LysArg: 1.162 ± 0.027
0.951LysSer: 0.951 ± 0.025
0.997LysThr: 0.997 ± 0.027
1.701LysVal: 1.701 ± 0.035
0.224LysTrp: 0.224 ± 0.012
0.421LysTyr: 0.421 ± 0.016
0.0LysXaa: 0.0 ± 0.0
Leu
17.132LeuAla: 17.132 ± 0.142
0.843LeuCys: 0.843 ± 0.021
7.228LeuAsp: 7.228 ± 0.065
4.658LeuGlu: 4.658 ± 0.048
2.67LeuPhe: 2.67 ± 0.041
10.08LeuGly: 10.08 ± 0.078
2.369LeuHis: 2.369 ± 0.039
2.929LeuIle: 2.929 ± 0.039
1.725LeuLys: 1.725 ± 0.035
12.54LeuLeu: 12.54 ± 0.124
1.521LeuMet: 1.521 ± 0.027
1.69LeuAsn: 1.69 ± 0.03
7.129LeuPro: 7.129 ± 0.066
2.134LeuGln: 2.134 ± 0.032
9.082LeuArg: 9.082 ± 0.079
5.02LeuSer: 5.02 ± 0.052
7.13LeuThr: 7.13 ± 0.062
9.446LeuVal: 9.446 ± 0.082
1.315LeuTrp: 1.315 ± 0.026
1.764LeuTyr: 1.764 ± 0.032
0.001LeuXaa: 0.001 ± 0.001
Met
2.068MetAla: 2.068 ± 0.033
0.11MetCys: 0.11 ± 0.008
0.789MetAsp: 0.789 ± 0.019
0.611MetGlu: 0.611 ± 0.018
0.445MetPhe: 0.445 ± 0.016
1.143MetGly: 1.143 ± 0.028
0.295MetHis: 0.295 ± 0.011
0.595MetIle: 0.595 ± 0.018
0.338MetLys: 0.338 ± 0.014
1.596MetLeu: 1.596 ± 0.032
0.259MetMet: 0.259 ± 0.011
0.367MetAsn: 0.367 ± 0.015
1.027MetPro: 1.027 ± 0.022
0.371MetGln: 0.371 ± 0.014
1.214MetArg: 1.214 ± 0.025
1.128MetSer: 1.128 ± 0.022
1.366MetThr: 1.366 ± 0.024
1.221MetVal: 1.221 ± 0.028
0.169MetTrp: 0.169 ± 0.01
0.272MetTyr: 0.272 ± 0.011
0.0MetXaa: 0.0 ± 0.0
Asn
2.173AsnAla: 2.173 ± 0.04
0.156AsnCys: 0.156 ± 0.008
0.898AsnAsp: 0.898 ± 0.02
0.756AsnGlu: 0.756 ± 0.021
0.461AsnPhe: 0.461 ± 0.016
1.99AsnGly: 1.99 ± 0.041
0.388AsnHis: 0.388 ± 0.012
0.594AsnIle: 0.594 ± 0.017
0.348AsnLys: 0.348 ± 0.015
1.711AsnLeu: 1.711 ± 0.03
0.253AsnMet: 0.253 ± 0.012
0.427AsnAsn: 0.427 ± 0.015
1.41AsnPro: 1.41 ± 0.026
0.512AsnGln: 0.512 ± 0.018
1.291AsnArg: 1.291 ± 0.025
0.923AsnSer: 0.923 ± 0.023
1.127AsnThr: 1.127 ± 0.029
1.251AsnVal: 1.251 ± 0.023
0.283AsnTrp: 0.283 ± 0.012
0.403AsnTyr: 0.403 ± 0.015
0.0AsnXaa: 0.0 ± 0.0
Pro
10.281ProAla: 10.281 ± 0.095
0.327ProCys: 0.327 ± 0.012
4.649ProAsp: 4.649 ± 0.06
4.422ProGlu: 4.422 ± 0.047
1.586ProPhe: 1.586 ± 0.028
7.482ProGly: 7.482 ± 0.063
1.249ProHis: 1.249 ± 0.028
1.331ProIle: 1.331 ± 0.023
1.035ProLys: 1.035 ± 0.024
5.578ProLeu: 5.578 ± 0.058
0.908ProMet: 0.908 ± 0.021
0.978ProAsn: 0.978 ± 0.022
3.572ProPro: 3.572 ± 0.053
1.707ProGln: 1.707 ± 0.032
3.852ProArg: 3.852 ± 0.043
3.063ProSer: 3.063 ± 0.044
3.648ProThr: 3.648 ± 0.056
5.98ProVal: 5.98 ± 0.05
0.919ProTrp: 0.919 ± 0.022
1.298ProTyr: 1.298 ± 0.025
0.0ProXaa: 0.0 ± 0.0
Gln
3.625GlnAla: 3.625 ± 0.047
0.175GlnCys: 0.175 ± 0.009
1.429GlnAsp: 1.429 ± 0.026
1.358GlnGlu: 1.358 ± 0.027
0.658GlnPhe: 0.658 ± 0.017
2.168GlnGly: 2.168 ± 0.032
0.625GlnHis: 0.625 ± 0.021
0.963GlnIle: 0.963 ± 0.022
0.516GlnLys: 0.516 ± 0.019
3.194GlnLeu: 3.194 ± 0.04
0.38GlnMet: 0.38 ± 0.014
0.491GlnAsn: 0.491 ± 0.016
1.658GlnPro: 1.658 ± 0.033
1.3GlnGln: 1.3 ± 0.044
2.283GlnArg: 2.283 ± 0.037
1.21GlnSer: 1.21 ± 0.023
1.176GlnThr: 1.176 ± 0.025
2.379GlnVal: 2.379 ± 0.032
0.477GlnTrp: 0.477 ± 0.015
0.619GlnTyr: 0.619 ± 0.019
0.0GlnXaa: 0.0 ± 0.0
Arg
10.491ArgAla: 10.491 ± 0.096
0.541ArgCys: 0.541 ± 0.016
3.914ArgAsp: 3.914 ± 0.046
4.686ArgGlu: 4.686 ± 0.052
2.361ArgPhe: 2.361 ± 0.036
5.756ArgGly: 5.756 ± 0.056
2.04ArgHis: 2.04 ± 0.037
3.357ArgIle: 3.357 ± 0.049
1.318ArgLys: 1.318 ± 0.032
9.414ArgLeu: 9.414 ± 0.084
1.63ArgMet: 1.63 ± 0.028
1.318ArgAsn: 1.318 ± 0.026
5.61ArgPro: 5.61 ± 0.068
2.185ArgGln: 2.185 ± 0.033
7.903ArgArg: 7.903 ± 0.082
4.077ArgSer: 4.077 ± 0.05
5.536ArgThr: 5.536 ± 0.05
5.648ArgVal: 5.648 ± 0.051
1.376ArgTrp: 1.376 ± 0.027
1.765ArgTyr: 1.765 ± 0.03
0.001ArgXaa: 0.001 ± 0.001
Ser
6.602SerAla: 6.602 ± 0.057
0.43SerCys: 0.43 ± 0.014
2.31SerAsp: 2.31 ± 0.036
2.09SerGlu: 2.09 ± 0.032
1.497SerPhe: 1.497 ± 0.027
5.675SerGly: 5.675 ± 0.057
0.877SerHis: 0.877 ± 0.017
1.343SerIle: 1.343 ± 0.028
0.825SerLys: 0.825 ± 0.025
4.485SerLeu: 4.485 ± 0.048
0.934SerMet: 0.934 ± 0.022
0.855SerAsn: 0.855 ± 0.018
3.042SerPro: 3.042 ± 0.04
1.114SerGln: 1.114 ± 0.024
3.333SerArg: 3.333 ± 0.044
2.643SerSer: 2.643 ± 0.045
3.096SerThr: 3.096 ± 0.044
4.071SerVal: 4.071 ± 0.044
0.954SerTrp: 0.954 ± 0.024
1.163SerTyr: 1.163 ± 0.025
0.0SerXaa: 0.0 ± 0.0
Thr
9.811ThrAla: 9.811 ± 0.078
0.401ThrCys: 0.401 ± 0.014
3.605ThrAsp: 3.605 ± 0.043
3.168ThrGlu: 3.168 ± 0.039
1.572ThrPhe: 1.572 ± 0.032
7.398ThrGly: 7.398 ± 0.075
1.056ThrHis: 1.056 ± 0.022
1.41ThrIle: 1.41 ± 0.029
0.96ThrLys: 0.96 ± 0.024
5.739ThrLeu: 5.739 ± 0.054
0.837ThrMet: 0.837 ± 0.018
0.983ThrAsn: 0.983 ± 0.024
4.236ThrPro: 4.236 ± 0.056
1.14ThrGln: 1.14 ± 0.026
3.771ThrArg: 3.771 ± 0.041
2.799ThrSer: 2.799 ± 0.04
3.952ThrThr: 3.952 ± 0.061
6.658ThrVal: 6.658 ± 0.059
0.871ThrTrp: 0.871 ± 0.021
1.13ThrTyr: 1.13 ± 0.029
0.001ThrXaa: 0.001 ± 0.001
Val
11.061ValAla: 11.061 ± 0.084
0.682ValCys: 0.682 ± 0.017
5.152ValAsp: 5.152 ± 0.057
4.834ValGlu: 4.834 ± 0.054
2.409ValPhe: 2.409 ± 0.033
6.704ValGly: 6.704 ± 0.066
1.978ValHis: 1.978 ± 0.031
2.468ValIle: 2.468 ± 0.038
1.561ValLys: 1.561 ± 0.032
10.434ValLeu: 10.434 ± 0.086
1.256ValMet: 1.256 ± 0.031
1.653ValAsn: 1.653 ± 0.03
5.495ValPro: 5.495 ± 0.047
2.107ValGln: 2.107 ± 0.03
7.182ValArg: 7.182 ± 0.06
3.862ValSer: 3.862 ± 0.041
5.559ValThr: 5.559 ± 0.066
8.018ValVal: 8.018 ± 0.075
1.073ValTrp: 1.073 ± 0.024
1.469ValTyr: 1.469 ± 0.028
0.0ValXaa: 0.0 ± 0.0
Trp
1.731TrpAla: 1.731 ± 0.029
0.145TrpCys: 0.145 ± 0.007
0.804TrpAsp: 0.804 ± 0.022
0.749TrpGlu: 0.749 ± 0.02
0.504TrpPhe: 0.504 ± 0.016
1.032TrpGly: 1.032 ± 0.029
0.363TrpHis: 0.363 ± 0.014
0.541TrpIle: 0.541 ± 0.018
0.31TrpLys: 0.31 ± 0.014
1.783TrpLeu: 1.783 ± 0.032
0.25TrpMet: 0.25 ± 0.011
0.399TrpAsn: 0.399 ± 0.016
0.825TrpPro: 0.825 ± 0.023
0.631TrpGln: 0.631 ± 0.017
1.316TrpArg: 1.316 ± 0.025
0.993TrpSer: 0.993 ± 0.026
1.14TrpThr: 1.14 ± 0.025
0.985TrpVal: 0.985 ± 0.022
0.351TrpTrp: 0.351 ± 0.013
0.346TrpTyr: 0.346 ± 0.014
0.001TrpXaa: 0.001 ± 0.001
Tyr
2.46TyrAla: 2.46 ± 0.035
0.173TyrCys: 0.173 ± 0.009
1.28TyrAsp: 1.28 ± 0.033
1.064TyrGlu: 1.064 ± 0.025
0.6TyrPhe: 0.6 ± 0.017
2.141TyrGly: 2.141 ± 0.037
0.39TyrHis: 0.39 ± 0.012
0.442TyrIle: 0.442 ± 0.015
0.322TyrLys: 0.322 ± 0.012
2.241TyrLeu: 2.241 ± 0.033
0.216TyrMet: 0.216 ± 0.01
0.395TyrAsn: 0.395 ± 0.016
1.108TyrPro: 1.108 ± 0.024
0.63TyrGln: 0.63 ± 0.016
1.974TyrArg: 1.974 ± 0.034
0.919TyrSer: 0.919 ± 0.022
1.155TyrThr: 1.155 ± 0.026
1.414TyrVal: 1.414 ± 0.027
0.367TyrTrp: 0.367 ± 0.014
0.435TyrTyr: 0.435 ± 0.015
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.001XaaAla: 0.001 ± 0.001
0.0XaaCys: 0.0 ± 0.0
0.001XaaAsp: 0.001 ± 0.001
0.0XaaGlu: 0.0 ± 0.001
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.001XaaLeu: 0.001 ± 0.001
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.001
0.002XaaArg: 0.002 ± 0.001
0.0XaaSer: 0.0 ± 0.0
0.001XaaThr: 0.001 ± 0.001
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7273 proteins (2134324 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski