Thermasporomyces composti

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Thermasporomyces

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3739 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3D9V4Q6|A0A3D9V4Q6_9ACTN Exopolyphosphatase/guanosine-5'-triphosphate 3'-diphosphate pyrophosphatase OS=Thermasporomyces composti OX=696763 GN=DFJ64_1069 PE=4 SV=1
MM1 pKa = 7.57TYY3 pKa = 10.6VIAQPCVDD11 pKa = 4.5LKK13 pKa = 11.4DD14 pKa = 3.66RR15 pKa = 11.84ACVDD19 pKa = 3.86EE20 pKa = 5.5CPVDD24 pKa = 4.39CIYY27 pKa = 11.13EE28 pKa = 4.32GARR31 pKa = 11.84MLYY34 pKa = 9.23IHH36 pKa = 7.53PDD38 pKa = 3.09EE39 pKa = 5.5CVDD42 pKa = 4.38CGACEE47 pKa = 3.85PVCPVEE53 pKa = 4.7AIFYY57 pKa = 9.85EE58 pKa = 4.69DD59 pKa = 5.22DD60 pKa = 4.81VPEE63 pKa = 3.96QWKK66 pKa = 10.38DD67 pKa = 3.43YY68 pKa = 8.58YY69 pKa = 9.47TANVEE74 pKa = 4.23FFDD77 pKa = 5.64DD78 pKa = 3.97LGSPGGASKK87 pKa = 9.62TGVINKK93 pKa = 8.01DD94 pKa = 3.22HH95 pKa = 7.11PLIAALPPQNTEE107 pKa = 3.76GG108 pKa = 3.52

Molecular weight: 11.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3D9V9S6|A0A3D9V9S6_9ACTN ADP-heptose:LPS heptosyltransferase OS=Thermasporomyces composti OX=696763 GN=DFJ64_2345 PE=4 SV=1
MM1 pKa = 7.2TATGANPDD9 pKa = 3.49APALEE14 pKa = 4.25EE15 pKa = 4.17SRR17 pKa = 11.84TGRR20 pKa = 11.84EE21 pKa = 3.49TSVWRR26 pKa = 11.84WVGQPVAVLIMVAACLGYY44 pKa = 10.61VAIADD49 pKa = 4.35LDD51 pKa = 3.93AVAARR56 pKa = 11.84QLTWSALATRR66 pKa = 11.84TWEE69 pKa = 4.35HH70 pKa = 5.68IRR72 pKa = 11.84LTFVATLVVLAIALPCGVLLTRR94 pKa = 11.84QRR96 pKa = 11.84TKK98 pKa = 10.81AAAPLVTIAANVGQAAPAIGLLVLLALWLGLGFRR132 pKa = 11.84TSVIALSAYY141 pKa = 9.98AVLPVLRR148 pKa = 11.84NTIAGIRR155 pKa = 11.84GVDD158 pKa = 3.52PRR160 pKa = 11.84LVEE163 pKa = 4.22AGRR166 pKa = 11.84GMGMSATSVLFRR178 pKa = 11.84IEE180 pKa = 4.44LVLALPVILAGVRR193 pKa = 11.84VALILLVGTATLATFIDD210 pKa = 4.35GGGLGLLITTGIKK223 pKa = 9.87LQRR226 pKa = 11.84TSVLVVGAILVAALALLIDD245 pKa = 3.36WLGRR249 pKa = 11.84VVEE252 pKa = 4.34EE253 pKa = 3.93LARR256 pKa = 11.84PKK258 pKa = 10.84GVV260 pKa = 2.97

Molecular weight: 27.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3739

0

3739

1275144

29

1641

341.0

36.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.549 ± 0.048

0.777 ± 0.01

6.07 ± 0.031

5.926 ± 0.036

2.803 ± 0.021

8.695 ± 0.034

2.157 ± 0.018

3.471 ± 0.026

1.793 ± 0.025

10.301 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.645 ± 0.013

1.722 ± 0.018

6.174 ± 0.031

2.649 ± 0.02

8.879 ± 0.041

5.034 ± 0.023

5.993 ± 0.028

9.485 ± 0.038

1.643 ± 0.018

2.231 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski