Campylobacter iguaniorum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1757 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A076FDT0|A0A076FDT0_9PROT 30S ribosomal protein S4 OS=Campylobacter iguaniorum OX=1244531 GN=rpsD PE=3 SV=1
MM1 pKa = 7.63CMYY4 pKa = 10.39CEE6 pKa = 4.04KK7 pKa = 10.66PKK9 pKa = 10.81TEE11 pKa = 4.91DD12 pKa = 3.11EE13 pKa = 4.45HH14 pKa = 6.85FLCEE18 pKa = 3.98VCGVGMCDD26 pKa = 2.87EE27 pKa = 5.28CYY29 pKa = 10.4DD30 pKa = 4.29ALVEE34 pKa = 4.29HH35 pKa = 7.55DD36 pKa = 3.99GHH38 pKa = 6.43FHH40 pKa = 7.8LILEE44 pKa = 4.58NCDD47 pKa = 3.5DD48 pKa = 3.97EE49 pKa = 6.46RR50 pKa = 11.84EE51 pKa = 3.86IDD53 pKa = 5.61LITKK57 pKa = 9.9ACGGSEE63 pKa = 4.01PDD65 pKa = 5.0YY66 pKa = 11.09ICEE69 pKa = 4.11DD70 pKa = 3.94CVNKK74 pKa = 10.31ILEE77 pKa = 4.34NPFKK81 pKa = 11.35DD82 pKa = 3.08MDD84 pKa = 3.63VSNIIEE90 pKa = 4.95FIDD93 pKa = 3.54NKK95 pKa = 10.79LPDD98 pKa = 3.93GEE100 pKa = 4.63EE101 pKa = 3.84IYY103 pKa = 10.67PFSSEE108 pKa = 4.54DD109 pKa = 3.41YY110 pKa = 10.49PLEE113 pKa = 3.94FDD115 pKa = 3.34KK116 pKa = 11.83NEE118 pKa = 3.87WEE120 pKa = 4.18EE121 pKa = 4.35VEE123 pKa = 4.54GNPILWKK130 pKa = 9.1TCLMDD135 pKa = 4.2NNGDD139 pKa = 3.58INRR142 pKa = 11.84EE143 pKa = 4.16TISDD147 pKa = 3.54AFLSKK152 pKa = 10.75RR153 pKa = 11.84EE154 pKa = 4.02ALMDD158 pKa = 4.06FYY160 pKa = 11.59KK161 pKa = 11.01NRR163 pKa = 11.84DD164 pKa = 3.26EE165 pKa = 4.25EE166 pKa = 4.31

Molecular weight: 19.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A076FA49|A0A076FA49_9PROT Tyrosine--tRNA ligase OS=Campylobacter iguaniorum OX=1244531 GN=tyrS PE=3 SV=1
MM1 pKa = 7.33RR2 pKa = 11.84NKK4 pKa = 10.42YY5 pKa = 9.86IEE7 pKa = 4.44AFEE10 pKa = 4.1NAQISNKK17 pKa = 9.82SVPDD21 pKa = 4.2FRR23 pKa = 11.84AGDD26 pKa = 3.72TLRR29 pKa = 11.84IAIRR33 pKa = 11.84IKK35 pKa = 10.55EE36 pKa = 4.05GDD38 pKa = 3.26KK39 pKa = 11.19SRR41 pKa = 11.84VQNFEE46 pKa = 3.89GVCIARR52 pKa = 11.84RR53 pKa = 11.84GTGAGEE59 pKa = 3.79TFIIRR64 pKa = 11.84KK65 pKa = 9.33IGANSVGVEE74 pKa = 4.32RR75 pKa = 11.84IFPIYY80 pKa = 10.3SEE82 pKa = 4.14SLEE85 pKa = 4.3TIEE88 pKa = 3.72VLRR91 pKa = 11.84RR92 pKa = 11.84GRR94 pKa = 11.84VRR96 pKa = 11.84RR97 pKa = 11.84SKK99 pKa = 10.85LFYY102 pKa = 10.73LRR104 pKa = 11.84DD105 pKa = 3.63RR106 pKa = 11.84RR107 pKa = 11.84GKK109 pKa = 9.22AARR112 pKa = 11.84IKK114 pKa = 9.86EE115 pKa = 4.17LKK117 pKa = 9.94KK118 pKa = 10.87

Molecular weight: 13.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1757

0

1757

534331

37

1505

304.1

34.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.182 ± 0.052

1.175 ± 0.023

5.71 ± 0.046

6.274 ± 0.058

5.502 ± 0.059

6.361 ± 0.048

1.457 ± 0.023

8.639 ± 0.055

8.703 ± 0.054

9.868 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.446 ± 0.027

5.912 ± 0.053

2.894 ± 0.032

2.708 ± 0.031

3.142 ± 0.034

7.039 ± 0.047

4.502 ± 0.045

6.121 ± 0.051

0.704 ± 0.02

3.661 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski