Coriobacteriales bacterium DNF00809

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; unclassified Coriobacteriales

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1709 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A133Z8W7|A0A133Z8W7_9ACTN Chloride transporter ClC family OS=Coriobacteriales bacterium DNF00809 OX=1588753 GN=HMPREF3190_01076 PE=4 SV=1
MM1 pKa = 7.31SFSGGADD8 pKa = 3.12TCVVIVGLDD17 pKa = 3.31EE18 pKa = 4.55TGTVDD23 pKa = 6.05DD24 pKa = 5.49RR25 pKa = 11.84DD26 pKa = 3.95GLNPADD32 pKa = 4.24GSDD35 pKa = 3.41VDD37 pKa = 4.1VCAGNDD43 pKa = 3.55VVDD46 pKa = 4.17CTRR49 pKa = 11.84DD50 pKa = 3.58GEE52 pKa = 4.29AHH54 pKa = 6.49AGGVGDD60 pKa = 3.73VTGCSAVTGDD70 pKa = 4.37TLCACDD76 pKa = 3.99GVLSKK81 pKa = 11.52GDD83 pKa = 3.28VWCIIGVSQRR93 pKa = 11.84EE94 pKa = 4.33AFDD97 pKa = 3.28STGRR101 pKa = 11.84LSEE104 pKa = 4.22VASSGVFDD112 pKa = 5.85VIPCSKK118 pKa = 10.34LLYY121 pKa = 8.66RR122 pKa = 11.84QGVIEE127 pKa = 4.05AA128 pKa = 4.35

Molecular weight: 12.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A133YYN5|A0A133YYN5_9ACTN Uncharacterized protein OS=Coriobacteriales bacterium DNF00809 OX=1588753 GN=HMPREF3190_01665 PE=4 SV=1
MM1 pKa = 7.51CVITRR6 pKa = 11.84AAARR10 pKa = 11.84SGTRR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84SRR18 pKa = 11.84FRR20 pKa = 11.84TRR22 pKa = 11.84SRR24 pKa = 11.84ASTRR28 pKa = 11.84ASNAPRR34 pKa = 11.84ASQRR38 pKa = 11.84ITSLL42 pKa = 3.22

Molecular weight: 4.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1709

0

1709

504769

37

2722

295.4

32.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.169 ± 0.079

1.889 ± 0.038

5.411 ± 0.055

5.555 ± 0.062

3.947 ± 0.048

6.467 ± 0.06

2.72 ± 0.035

5.978 ± 0.065

5.124 ± 0.088

9.25 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.441 ± 0.034

3.92 ± 0.055

4.016 ± 0.056

4.029 ± 0.046

5.055 ± 0.064

6.858 ± 0.057

6.014 ± 0.072

7.164 ± 0.06

0.861 ± 0.019

3.134 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski