Ligilactobacillus acidipiscis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Ligilactobacillus

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2127 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R2KKY0|A0A0R2KKY0_9LACO Phage protein OS=Ligilactobacillus acidipiscis OX=89059 GN=IV43_GL000048 PE=4 SV=1
MM1 pKa = 7.7DD2 pKa = 4.56NEE4 pKa = 4.01MTFYY8 pKa = 10.64QFLMTLRR15 pKa = 11.84DD16 pKa = 3.53PDD18 pKa = 4.86DD19 pKa = 4.47YY20 pKa = 12.08DD21 pKa = 4.13EE22 pKa = 4.85VVQFANNAFYY32 pKa = 10.75DD33 pKa = 3.55QSFPKK38 pKa = 10.33QQTNYY43 pKa = 9.96QKK45 pKa = 10.8LSQYY49 pKa = 11.5LEE51 pKa = 4.04MNGNYY56 pKa = 9.42LPSMTIFDD64 pKa = 5.07DD65 pKa = 3.65AWQQYY70 pKa = 8.45LEE72 pKa = 4.74KK73 pKa = 10.46IQQ75 pKa = 3.45

Molecular weight: 9.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R2KAZ3|A0A0R2KAZ3_9LACO NLPA lipoprotein OS=Ligilactobacillus acidipiscis OX=89059 GN=IV43_GL001231 PE=3 SV=1
MM1 pKa = 7.09EE2 pKa = 5.33RR3 pKa = 11.84CRR5 pKa = 11.84FCKK8 pKa = 8.82STKK11 pKa = 8.56VVKK14 pKa = 10.28NGKK17 pKa = 9.56RR18 pKa = 11.84PTKK21 pKa = 10.46LKK23 pKa = 10.76LPSLSEE29 pKa = 3.67QPLRR33 pKa = 11.84FRR35 pKa = 11.84LYY37 pKa = 9.13KK38 pKa = 9.78QRR40 pKa = 11.84YY41 pKa = 5.88FCRR44 pKa = 11.84EE45 pKa = 3.63CHH47 pKa = 5.28RR48 pKa = 11.84TFSAKK53 pKa = 9.52TEE55 pKa = 3.74LTQRR59 pKa = 11.84HH60 pKa = 4.93RR61 pKa = 11.84SITRR65 pKa = 11.84RR66 pKa = 11.84ARR68 pKa = 11.84QVIHH72 pKa = 6.64SLAKK76 pKa = 8.68EE77 pKa = 3.88TSPVKK82 pKa = 10.75NIAKK86 pKa = 9.71IVGVSASSVQRR97 pKa = 11.84ILYY100 pKa = 9.82ANKK103 pKa = 8.27TANVTPHH110 pKa = 7.13GLPKK114 pKa = 10.27ALCFAEE120 pKa = 4.35FRR122 pKa = 11.84STRR125 pKa = 11.84GRR127 pKa = 11.84FSFICIDD134 pKa = 4.43AKK136 pKa = 10.3THH138 pKa = 6.11DD139 pKa = 4.05CSYY142 pKa = 11.72SKK144 pKa = 10.26IACLRR149 pKa = 11.84RR150 pKa = 11.84SKK152 pKa = 10.99NIFSIITFF160 pKa = 4.1

Molecular weight: 18.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2127

0

2127

615153

50

1601

289.2

32.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.527 ± 0.064

0.58 ± 0.015

5.835 ± 0.049

5.996 ± 0.057

4.364 ± 0.045

6.628 ± 0.052

2.042 ± 0.021

6.883 ± 0.054

7.27 ± 0.064

9.807 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.61 ± 0.027

4.882 ± 0.037

3.477 ± 0.025

4.783 ± 0.052

3.916 ± 0.039

6.168 ± 0.043

5.651 ± 0.037

6.967 ± 0.043

0.945 ± 0.018

3.536 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski