Venturia nashicola

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; dothideomyceta; Dothideomycetes; Pleosporomycetidae; Venturiales; Venturiaceae; Venturia

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11754 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Z1P151|A0A4Z1P151_9PEZI VHS subgroup OS=Venturia nashicola OX=86259 GN=E6O75_ATG10297 PE=4 SV=1
MM1 pKa = 7.84KK2 pKa = 9.83STTLFTAATALFASTIANPVNSGSKK27 pKa = 8.68STLSTADD34 pKa = 3.64LQSVDD39 pKa = 4.0TLLEE43 pKa = 4.25SNKK46 pKa = 9.9AFSDD50 pKa = 3.87EE51 pKa = 4.13AVVGHH56 pKa = 6.14VKK58 pKa = 10.74LPIDD62 pKa = 3.66NSEE65 pKa = 4.65TILSATPSAPLTGPTYY81 pKa = 11.04GNSSHH86 pKa = 6.87AGPRR90 pKa = 11.84IWAPVCSKK98 pKa = 10.83GCASTTTTTVIHH110 pKa = 6.38VSTSTAVVSTMTVTAGVSSSPASTLSDD137 pKa = 3.54YY138 pKa = 11.9SNAADD143 pKa = 4.51DD144 pKa = 4.58SSTSSSDD151 pKa = 2.99VDD153 pKa = 3.49VGYY156 pKa = 7.52MTSTQTLISTMTGANVTFSRR176 pKa = 11.84STVTLAMNTTSSYY189 pKa = 10.79TSLATVTIDD198 pKa = 3.23PTNSVTFTLTTEE210 pKa = 4.05TTMATTDD217 pKa = 3.18TAEE220 pKa = 4.16YY221 pKa = 10.74DD222 pKa = 3.54VTEE225 pKa = 4.27TMDD228 pKa = 3.41VASTISVDD236 pKa = 4.22SVIDD240 pKa = 3.91PDD242 pKa = 4.24TATACANAIVDD253 pKa = 3.71HH254 pKa = 6.35AVNLTVDD261 pKa = 4.04LTVDD265 pKa = 4.18LDD267 pKa = 3.69VCKK270 pKa = 10.58ALDD273 pKa = 3.88GVSIEE278 pKa = 4.14

Molecular weight: 28.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Z1NPF6|A0A4Z1NPF6_9PEZI Glycoside hydrolase family 1 protein OS=Venturia nashicola OX=86259 GN=E6O75_ATG10541 PE=3 SV=1
MM1 pKa = 7.76PKK3 pKa = 9.34VQTYY7 pKa = 7.42KK8 pKa = 10.69TYY10 pKa = 9.84IQPSIARR17 pKa = 11.84GRR19 pKa = 11.84SNSAAGRR26 pKa = 11.84GHH28 pKa = 6.76TSSTWRR34 pKa = 11.84RR35 pKa = 11.84FTRR38 pKa = 11.84WRR40 pKa = 11.84AVCAVNIGWKK50 pKa = 10.07DD51 pKa = 3.2RR52 pKa = 11.84SSRR55 pKa = 11.84EE56 pKa = 3.87NILKK60 pKa = 10.09LRR62 pKa = 11.84QLPPNEE68 pKa = 4.56TYY70 pKa = 10.85NSSFSQRR77 pKa = 11.84DD78 pKa = 3.68NVCHH82 pKa = 6.45EE83 pKa = 5.21EE84 pKa = 3.95IPVPDD89 pKa = 3.99KK90 pKa = 11.56SGDD93 pKa = 3.59GPLVGFSVQLGTSLQVNINCGIGTLLGSCSSTEE126 pKa = 3.83GHH128 pKa = 5.88VRR130 pKa = 11.84AGTQNQCMSQNTMPSLASKK149 pKa = 9.12VRR151 pKa = 11.84NWEE154 pKa = 3.75LHH156 pKa = 5.54LSSNSRR162 pKa = 11.84GGFAQAFRR170 pKa = 11.84FSRR173 pKa = 11.84VRR175 pKa = 11.84WLL177 pKa = 3.31

Molecular weight: 19.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11754

0

11754

5212399

66

9086

443.5

49.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.448 ± 0.021

1.194 ± 0.009

5.546 ± 0.015

6.257 ± 0.023

3.703 ± 0.016

6.894 ± 0.021

2.388 ± 0.01

4.995 ± 0.016

5.367 ± 0.022

8.607 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.271 ± 0.009

3.797 ± 0.013

6.145 ± 0.03

4.054 ± 0.019

5.913 ± 0.02

8.305 ± 0.026

6.113 ± 0.015

5.909 ± 0.016

1.426 ± 0.01

2.662 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski