Umezawaea tangerina

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales;

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9362 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T0SWP2|A0A2T0SWP2_9PSEU Uncharacterized protein OS=Umezawaea tangerina OX=84725 GN=CLV43_10952 PE=4 SV=1
MM1 pKa = 6.81TTLCAMTVAGTALPASADD19 pKa = 3.79TAQSGPVRR27 pKa = 11.84VDD29 pKa = 3.17IAPGKK34 pKa = 10.09GIVVTPDD41 pKa = 3.21DD42 pKa = 3.52YY43 pKa = 11.16WYY45 pKa = 11.24VRR47 pKa = 11.84GTFSFTASVTDD58 pKa = 3.26VGEE61 pKa = 4.49ADD63 pKa = 4.18DD64 pKa = 4.68EE65 pKa = 4.53NLFVFVSVPDD75 pKa = 4.0VIRR78 pKa = 11.84MTGYY82 pKa = 10.2QGDD85 pKa = 3.59RR86 pKa = 11.84WRR88 pKa = 11.84CEE90 pKa = 4.0SVEE93 pKa = 4.1GGVDD97 pKa = 3.4CTNPDD102 pKa = 3.32LVVPGEE108 pKa = 4.14AWPLLTITATGAGYY122 pKa = 10.12VQDD125 pKa = 4.22TLDD128 pKa = 3.38VHH130 pKa = 6.89AVADD134 pKa = 3.97SAEE137 pKa = 4.21WTQTGTPFVYY147 pKa = 9.03DD148 pKa = 3.67TSSS151 pKa = 2.58

Molecular weight: 15.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T0TCR3|A0A2T0TCR3_9PSEU ADP-ribosylglycohydrolase OS=Umezawaea tangerina OX=84725 GN=CLV43_103184 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.79HH17 pKa = 5.67RR18 pKa = 11.84KK19 pKa = 8.46LLRR22 pKa = 11.84KK23 pKa = 7.95TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 9.84RR31 pKa = 11.84GKK33 pKa = 9.61

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9362

0

9362

3192573

29

9396

341.0

36.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.179 ± 0.038

0.739 ± 0.008

6.384 ± 0.024

5.348 ± 0.026

2.87 ± 0.013

9.31 ± 0.026

2.298 ± 0.012

2.918 ± 0.016

1.964 ± 0.021

10.583 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.633 ± 0.01

1.836 ± 0.019

5.846 ± 0.025

2.563 ± 0.015

7.87 ± 0.033

5.192 ± 0.02

6.249 ± 0.026

9.796 ± 0.031

1.53 ± 0.011

1.891 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski