Gordonia phage Pipp

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fairfaxidumvirus; unclassified Fairfaxidumvirus

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 84 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J6TG88|A0A5J6TG88_9CAUD Uncharacterized protein OS=Gordonia phage Pipp OX=2599846 GN=76 PE=4 SV=1
MM1 pKa = 7.76TDD3 pKa = 3.02NTEE6 pKa = 4.12PTVPTCSLCRR16 pKa = 11.84RR17 pKa = 11.84EE18 pKa = 4.07RR19 pKa = 11.84TLADD23 pKa = 3.7AYY25 pKa = 10.67DD26 pKa = 4.01YY27 pKa = 11.75NPLQVITGQPVGWYY41 pKa = 9.96SGDD44 pKa = 3.69DD45 pKa = 3.86GEE47 pKa = 5.54VCPQCMANTLNGQVV61 pKa = 3.28

Molecular weight: 6.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J6THW2|A0A5J6THW2_9CAUD Uncharacterized protein OS=Gordonia phage Pipp OX=2599846 GN=8 PE=4 SV=1
MM1 pKa = 7.7RR2 pKa = 11.84CCAHH6 pKa = 6.75TGQHH10 pKa = 6.08LFSFPRR16 pKa = 11.84RR17 pKa = 11.84GAAVRR22 pKa = 11.84APSTPHH28 pKa = 4.56TRR30 pKa = 11.84CWAGINRR37 pKa = 11.84AVTGLPRR44 pKa = 11.84TGPNTRR50 pKa = 11.84STRR53 pKa = 11.84AATGPQPDD61 pKa = 4.52EE62 pKa = 4.3NPMARR67 pKa = 11.84RR68 pKa = 11.84RR69 pKa = 11.84PNPEE73 pKa = 3.24QRR75 pKa = 11.84GLGHH79 pKa = 6.69AHH81 pKa = 6.24KK82 pKa = 10.55QQVKK86 pKa = 9.27HH87 pKa = 5.94LKK89 pKa = 7.95TRR91 pKa = 11.84HH92 pKa = 5.47VDD94 pKa = 3.6GTPCWWCGKK103 pKa = 9.42PMYY106 pKa = 10.3LDD108 pKa = 3.19RR109 pKa = 11.84TRR111 pKa = 11.84NPDD114 pKa = 3.68YY115 pKa = 11.24DD116 pKa = 3.68PTSPDD121 pKa = 3.22RR122 pKa = 11.84ASGSLAGDD130 pKa = 3.23HH131 pKa = 6.01TLARR135 pKa = 11.84THH137 pKa = 6.66GGTLADD143 pKa = 3.84RR144 pKa = 11.84LLHH147 pKa = 5.57GRR149 pKa = 11.84CNKK152 pKa = 9.43EE153 pKa = 3.87RR154 pKa = 11.84GDD156 pKa = 3.61GRR158 pKa = 11.84HH159 pKa = 6.0DD160 pKa = 3.33HH161 pKa = 6.33TRR163 pKa = 11.84PAVTGKK169 pKa = 9.2HH170 pKa = 4.68QPTPTTHH177 pKa = 7.2LAINCWPP184 pKa = 3.68

Molecular weight: 20.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

84

0

84

16686

44

1885

198.6

21.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.65 ± 0.489

0.827 ± 0.135

7.006 ± 0.308

5.502 ± 0.255

2.823 ± 0.134

8.444 ± 0.297

2.307 ± 0.21

4.255 ± 0.154

3.338 ± 0.225

7.695 ± 0.228

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.337 ± 0.173

2.895 ± 0.145

5.975 ± 0.265

3.41 ± 0.151

7.545 ± 0.368

5.076 ± 0.206

6.982 ± 0.259

7.707 ± 0.253

1.954 ± 0.134

2.271 ± 0.165
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski