Maioricimonas rarisocia

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Maioricimonas

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5804 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A517Z9A8|A0A517Z9A8_9PLAN L-rhamnonate dehydratase OS=Maioricimonas rarisocia OX=2528026 GN=rhmD_1 PE=4 SV=1
MM1 pKa = 7.91RR2 pKa = 11.84GDD4 pKa = 3.95CGKK7 pKa = 10.32AWSHH11 pKa = 6.19IGAMVLCASLSAGCGGGNDD30 pKa = 4.14GPEE33 pKa = 4.65LIDD36 pKa = 3.49VYY38 pKa = 10.85GTVTMDD44 pKa = 3.54GQPLEE49 pKa = 4.39GATVQFAPEE58 pKa = 4.1GGAGEE63 pKa = 4.3GRR65 pKa = 11.84RR66 pKa = 11.84LVAGRR71 pKa = 11.84TDD73 pKa = 3.08SSGEE77 pKa = 3.72YY78 pKa = 9.87SLQYY82 pKa = 10.62SPSRR86 pKa = 11.84DD87 pKa = 3.06GAAPGSYY94 pKa = 8.93RR95 pKa = 11.84VSITTYY101 pKa = 10.52RR102 pKa = 11.84EE103 pKa = 3.79MEE105 pKa = 3.94VDD107 pKa = 3.74EE108 pKa = 5.43EE109 pKa = 4.75GMDD112 pKa = 3.71VPGSPEE118 pKa = 4.02TVPDD122 pKa = 3.79VYY124 pKa = 11.43NVNTTLAADD133 pKa = 3.83VSSDD137 pKa = 3.37NAEE140 pKa = 4.36HH141 pKa = 6.73NFEE144 pKa = 4.84LDD146 pKa = 3.31SSEE149 pKa = 4.44GEE151 pKa = 4.36VIGGQGGEE159 pKa = 4.61DD160 pKa = 3.63FGDD163 pKa = 4.0DD164 pKa = 4.72DD165 pKa = 4.19EE166 pKa = 7.18AEE168 pKa = 4.06

Molecular weight: 17.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A517Z2H3|A0A517Z2H3_9PLAN Fumarate hydratase class II OS=Maioricimonas rarisocia OX=2528026 GN=fumC PE=3 SV=1
MM1 pKa = 7.83AKK3 pKa = 8.26TQRR6 pKa = 11.84KK7 pKa = 8.43LKK9 pKa = 9.88KK10 pKa = 9.26ANHH13 pKa = 6.11GKK15 pKa = 10.09RR16 pKa = 11.84PASAQARR23 pKa = 11.84RR24 pKa = 11.84SKK26 pKa = 10.37RR27 pKa = 11.84RR28 pKa = 11.84HH29 pKa = 5.3IKK31 pKa = 8.37TT32 pKa = 3.26

Molecular weight: 3.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5804

0

5804

2193700

29

8308

378.0

41.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.072 ± 0.034

1.152 ± 0.013

6.302 ± 0.026

6.757 ± 0.034

3.553 ± 0.018

7.974 ± 0.043

2.335 ± 0.018

4.538 ± 0.019

2.666 ± 0.027

9.955 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.081 ± 0.014

2.697 ± 0.022

5.666 ± 0.031

3.838 ± 0.022

7.681 ± 0.038

5.861 ± 0.022

5.579 ± 0.046

7.403 ± 0.031

1.557 ± 0.015

2.333 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski