Aidingimonas halophila

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Aidingimonas

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3626 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H3AYB2|A0A1H3AYB2_9GAMM UPF0250 protein SAMN05443545_10568 OS=Aidingimonas halophila OX=574349 GN=SAMN05443545_10568 PE=3 SV=1
MM1 pKa = 7.22IANVAIYY8 pKa = 8.94KK9 pKa = 9.03WCLITFSILWLAGCSDD25 pKa = 3.76QSWRR29 pKa = 11.84TTSISDD35 pKa = 3.76IMPDD39 pKa = 3.52LDD41 pKa = 4.71FEE43 pKa = 4.94LVDD46 pKa = 3.96EE47 pKa = 4.77NGEE50 pKa = 4.04AVTDD54 pKa = 4.29DD55 pKa = 4.53EE56 pKa = 4.9YY57 pKa = 11.63LGNPTLLYY65 pKa = 10.68FGFTYY70 pKa = 10.76CPDD73 pKa = 3.26VCPNTLSRR81 pKa = 11.84LATAIGQLDD90 pKa = 3.77AEE92 pKa = 4.5VRR94 pKa = 11.84DD95 pKa = 4.63DD96 pKa = 3.47IRR98 pKa = 11.84VLFVSVDD105 pKa = 3.54PGRR108 pKa = 11.84DD109 pKa = 3.36TPEE112 pKa = 3.62VLSRR116 pKa = 11.84YY117 pKa = 7.68TDD119 pKa = 2.92AFGPQFIGLSGDD131 pKa = 3.31NSALDD136 pKa = 3.8AVTKK140 pKa = 10.1RR141 pKa = 11.84YY142 pKa = 9.64RR143 pKa = 11.84VTYY146 pKa = 10.14SYY148 pKa = 11.67GEE150 pKa = 4.0EE151 pKa = 4.38DD152 pKa = 3.07SDD154 pKa = 3.9GNYY157 pKa = 10.92DD158 pKa = 3.65VTHH161 pKa = 6.69SSAVFAFDD169 pKa = 4.26QNGEE173 pKa = 4.07AQFMIRR179 pKa = 11.84DD180 pKa = 3.94TDD182 pKa = 3.75SMQDD186 pKa = 2.97IVSDD190 pKa = 4.29LDD192 pKa = 3.33QLVAEE197 pKa = 4.72EE198 pKa = 4.2

Molecular weight: 22.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H2XSR1|A0A1H2XSR1_9GAMM L-threonine dehydratase OS=Aidingimonas halophila OX=574349 GN=ilvA PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIKK11 pKa = 10.2RR12 pKa = 11.84KK13 pKa = 9.69RR14 pKa = 11.84MHH16 pKa = 6.75GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.3NGRR28 pKa = 11.84AVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3626

0

3626

1177209

29

8694

324.7

35.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.289 ± 0.042

0.983 ± 0.016

6.389 ± 0.055

6.48 ± 0.044

3.447 ± 0.029

8.04 ± 0.055

2.592 ± 0.03

5.082 ± 0.033

2.545 ± 0.035

11.102 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.641 ± 0.02

2.676 ± 0.021

4.788 ± 0.034

3.819 ± 0.027

7.074 ± 0.046

5.804 ± 0.036

5.185 ± 0.029

7.096 ± 0.038

1.485 ± 0.021

2.482 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski