Cauliflower mosaic virus (strain Strasbourg) (CaMV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus; Cauliflower mosaic virus

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P03545|MVP_CAMVS Movement protein OS=Cauliflower mosaic virus (strain Strasbourg) OX=10648 GN=ORF I PE=1 SV=1
MM1 pKa = 7.73AEE3 pKa = 4.5SILDD7 pKa = 3.48RR8 pKa = 11.84TINRR12 pKa = 11.84FWYY15 pKa = 10.5NLGEE19 pKa = 4.56DD20 pKa = 4.62CLSEE24 pKa = 4.25SQFDD28 pKa = 3.63LMIRR32 pKa = 11.84LMEE35 pKa = 4.36EE36 pKa = 4.14SLDD39 pKa = 3.54GDD41 pKa = 3.95QIIDD45 pKa = 3.92LTSLPSDD52 pKa = 3.49NLQVEE57 pKa = 4.67QVMTTTEE64 pKa = 3.94DD65 pKa = 3.63SISEE69 pKa = 4.18EE70 pKa = 3.76EE71 pKa = 4.65SEE73 pKa = 4.13FLLAIGEE80 pKa = 4.38TSEE83 pKa = 4.38EE84 pKa = 4.14EE85 pKa = 4.08SDD87 pKa = 3.74SGEE90 pKa = 4.0EE91 pKa = 4.06PEE93 pKa = 4.39FEE95 pKa = 4.26QVRR98 pKa = 11.84MDD100 pKa = 3.4RR101 pKa = 11.84TGGTEE106 pKa = 3.59IPKK109 pKa = 10.47EE110 pKa = 3.95EE111 pKa = 4.82DD112 pKa = 3.31GEE114 pKa = 4.73GPSRR118 pKa = 11.84YY119 pKa = 9.29NEE121 pKa = 4.24RR122 pKa = 11.84KK123 pKa = 9.81RR124 pKa = 11.84KK125 pKa = 7.47TPEE128 pKa = 3.29DD129 pKa = 4.14RR130 pKa = 11.84YY131 pKa = 10.74FPTQPKK137 pKa = 8.96TIPGQKK143 pKa = 6.7QTSMGMLNIDD153 pKa = 3.55CQTNRR158 pKa = 11.84RR159 pKa = 11.84TLIDD163 pKa = 3.42DD164 pKa = 4.03WAAEE168 pKa = 3.64IGLIVKK174 pKa = 7.4TNRR177 pKa = 11.84EE178 pKa = 4.21DD179 pKa = 3.71YY180 pKa = 10.97LDD182 pKa = 4.59PEE184 pKa = 4.86TILLLMEE191 pKa = 5.35HH192 pKa = 6.19KK193 pKa = 9.65TSGIAKK199 pKa = 8.99EE200 pKa = 4.39LIRR203 pKa = 11.84NTRR206 pKa = 11.84WNRR209 pKa = 11.84TTGDD213 pKa = 3.34IIEE216 pKa = 4.17QVIDD220 pKa = 3.41AMYY223 pKa = 11.1TMFLGLNYY231 pKa = 10.01SDD233 pKa = 4.16NKK235 pKa = 9.76VAEE238 pKa = 4.95KK239 pKa = 9.96IDD241 pKa = 3.71EE242 pKa = 4.11QEE244 pKa = 3.87KK245 pKa = 10.81AKK247 pKa = 10.57IRR249 pKa = 11.84MTKK252 pKa = 10.23LQLCDD257 pKa = 2.78ICYY260 pKa = 10.45LEE262 pKa = 5.71EE263 pKa = 4.14FTCDD267 pKa = 3.39YY268 pKa = 9.76EE269 pKa = 5.13KK270 pKa = 11.56NMYY273 pKa = 8.34KK274 pKa = 9.48TEE276 pKa = 4.02LADD279 pKa = 3.74FPGYY283 pKa = 10.07INQYY287 pKa = 9.44LSKK290 pKa = 10.49IPIIGEE296 pKa = 3.82KK297 pKa = 10.07ALTRR301 pKa = 11.84FRR303 pKa = 11.84HH304 pKa = 5.1EE305 pKa = 4.41ANGTSIYY312 pKa = 10.98SLGFAAKK319 pKa = 9.37IVKK322 pKa = 10.16EE323 pKa = 4.25EE324 pKa = 3.98LSKK327 pKa = 10.93ICDD330 pKa = 3.44LSKK333 pKa = 10.64KK334 pKa = 8.32QKK336 pKa = 10.13KK337 pKa = 9.23LKK339 pKa = 10.43KK340 pKa = 9.92FNKK343 pKa = 8.29KK344 pKa = 9.46CCSIGEE350 pKa = 4.0ASTEE354 pKa = 4.1YY355 pKa = 10.83GCKK358 pKa = 8.94KK359 pKa = 9.29TSTKK363 pKa = 10.25KK364 pKa = 8.99YY365 pKa = 8.73HH366 pKa = 6.26KK367 pKa = 9.99KK368 pKa = 10.2RR369 pKa = 11.84YY370 pKa = 7.13KK371 pKa = 10.25KK372 pKa = 10.09KK373 pKa = 8.1YY374 pKa = 9.34KK375 pKa = 10.21AYY377 pKa = 9.9KK378 pKa = 9.42PYY380 pKa = 10.45KK381 pKa = 8.96KK382 pKa = 9.89KK383 pKa = 10.79KK384 pKa = 8.5KK385 pKa = 9.57FRR387 pKa = 11.84SGKK390 pKa = 8.01YY391 pKa = 8.61FKK393 pKa = 10.48PKK395 pKa = 9.32EE396 pKa = 4.19KK397 pKa = 10.3KK398 pKa = 9.83GSKK401 pKa = 9.16QKK403 pKa = 10.65YY404 pKa = 7.8CPKK407 pKa = 10.37GKK409 pKa = 9.81KK410 pKa = 9.42DD411 pKa = 3.64CRR413 pKa = 11.84CWICNIEE420 pKa = 3.72GHH422 pKa = 5.91YY423 pKa = 11.26ANEE426 pKa = 4.29CPNRR430 pKa = 11.84QSSEE434 pKa = 3.98KK435 pKa = 10.95AHH437 pKa = 6.75ILQQAEE443 pKa = 4.36KK444 pKa = 10.6LGLQPIEE451 pKa = 4.03EE452 pKa = 4.81PYY454 pKa = 10.96EE455 pKa = 4.14GVQEE459 pKa = 4.31VFILEE464 pKa = 4.23YY465 pKa = 10.61KK466 pKa = 10.49EE467 pKa = 4.56EE468 pKa = 4.1EE469 pKa = 4.44EE470 pKa = 4.21EE471 pKa = 4.39TSTEE475 pKa = 4.02EE476 pKa = 4.06SDD478 pKa = 4.03GSSTSEE484 pKa = 5.31DD485 pKa = 3.43SDD487 pKa = 3.84SDD489 pKa = 3.58

Molecular weight: 56.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P03551|VAP_CAMVS Virion-associated protein OS=Cauliflower mosaic virus (strain Strasbourg) OX=10648 GN=ORF III PE=1 SV=1
MM1 pKa = 7.71SITGQPHH8 pKa = 6.08VYY10 pKa = 10.34KK11 pKa = 10.15KK12 pKa = 10.26DD13 pKa = 3.28TIIRR17 pKa = 11.84LKK19 pKa = 10.51PLSLNSNNRR28 pKa = 11.84SYY30 pKa = 11.62VFSSSKK36 pKa = 11.2GNIQNIINHH45 pKa = 6.59LNNLNEE51 pKa = 3.99IVGRR55 pKa = 11.84SLLGIWKK62 pKa = 9.14INSYY66 pKa = 10.68FGLSKK71 pKa = 10.89DD72 pKa = 3.5PSEE75 pKa = 4.67SKK77 pKa = 10.77SKK79 pKa = 10.86NPSVFNTAKK88 pKa = 10.17TIFKK92 pKa = 10.49SGGVDD97 pKa = 3.16YY98 pKa = 11.05SSQLKK103 pKa = 9.59EE104 pKa = 3.87IKK106 pKa = 10.32SLLEE110 pKa = 3.97AQNTRR115 pKa = 11.84IKK117 pKa = 10.65SLEE120 pKa = 3.85KK121 pKa = 10.38AIQSLEE127 pKa = 3.98NKK129 pKa = 9.81IEE131 pKa = 4.09PEE133 pKa = 4.02PLTKK137 pKa = 10.77EE138 pKa = 3.86EE139 pKa = 4.05VKK141 pKa = 10.52EE142 pKa = 3.89LKK144 pKa = 10.55EE145 pKa = 4.32SINSIKK151 pKa = 10.61EE152 pKa = 3.7GLKK155 pKa = 10.77NIIGG159 pKa = 3.69

Molecular weight: 17.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2303

129

679

383.8

43.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.037 ± 0.604

1.65 ± 0.28

5.124 ± 0.439

8.337 ± 0.941

3.734 ± 0.525

4.993 ± 0.335

2.041 ± 0.405

7.859 ± 0.416

10.812 ± 0.404

8.511 ± 0.574

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.215 ± 0.211

5.862 ± 0.999

4.69 ± 0.746

4.559 ± 0.267

3.517 ± 0.383

7.251 ± 0.764

5.558 ± 0.425

4.342 ± 0.591

0.868 ± 0.165

3.04 ± 0.343
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski