Photobacterium jeanii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4290 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A178KHI3|A0A178KHI3_9GAMM Flagellar protein FliL OS=Photobacterium jeanii OX=858640 GN=A3K86_09800 PE=3 SV=1
MM1 pKa = 7.55LSKK4 pKa = 10.79FEE6 pKa = 4.43QVQQQWGGTSDD17 pKa = 5.67VIDD20 pKa = 3.36HH21 pKa = 6.86WLLSRR26 pKa = 11.84QQLLIDD32 pKa = 3.65YY33 pKa = 8.05CKK35 pKa = 10.56LAGLPPFDD43 pKa = 4.47NSNNQLPEE51 pKa = 4.0SSQLQLFSQQLVDD64 pKa = 4.39YY65 pKa = 10.48ISAGHH70 pKa = 5.71FKK72 pKa = 10.39IYY74 pKa = 10.87DD75 pKa = 3.38MVMARR80 pKa = 11.84WNDD83 pKa = 3.24TGYY86 pKa = 11.1SPTEE90 pKa = 5.04DD91 pKa = 3.21ISQLYY96 pKa = 10.21LKK98 pKa = 8.96ITQTTDD104 pKa = 3.04PLLNFADD111 pKa = 5.3RR112 pKa = 11.84YY113 pKa = 10.58CDD115 pKa = 3.82DD116 pKa = 4.69NEE118 pKa = 4.72ALDD121 pKa = 5.04SLDD124 pKa = 5.21DD125 pKa = 4.39DD126 pKa = 5.18LSVIGQLMEE135 pKa = 3.76QRR137 pKa = 11.84FALEE141 pKa = 4.04DD142 pKa = 3.4QLIEE146 pKa = 5.01LISEE150 pKa = 4.38SLACPPGAA158 pKa = 4.46

Molecular weight: 18.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A178K7J9|A0A178K7J9_9GAMM Arylsulfatase OS=Photobacterium jeanii OX=858640 GN=A3K86_16745 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84ATINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSKK44 pKa = 10.84

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4290

0

4290

1410523

35

3634

328.8

36.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.216 ± 0.041

1.059 ± 0.013

5.542 ± 0.037

6.136 ± 0.032

4.037 ± 0.026

6.851 ± 0.041

2.307 ± 0.022

6.055 ± 0.027

5.064 ± 0.032

10.29 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.75 ± 0.022

4.181 ± 0.026

3.982 ± 0.022

4.952 ± 0.038

4.491 ± 0.031

6.306 ± 0.032

5.463 ± 0.026

7.041 ± 0.034

1.258 ± 0.015

3.019 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski