Corynebacterium atypicum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales;

Average proteome isoelectric point is 6.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1533 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A075TTJ3|A0A075TTJ3_9CORY Aspartate-semialdehyde dehydrogenase OS=Corynebacterium atypicum OX=191610 GN=asd PE=3 SV=1
MM1 pKa = 7.78KK2 pKa = 8.83MTDD5 pKa = 4.34DD6 pKa = 4.92DD7 pKa = 4.78GEE9 pKa = 4.6LPVFLDD15 pKa = 3.54DD16 pKa = 4.41QSYY19 pKa = 7.81RR20 pKa = 11.84TCSEE24 pKa = 4.16CTSDD28 pKa = 4.76CVPDD32 pKa = 3.88PFIAGEE38 pKa = 4.18GQGIRR43 pKa = 11.84IAFICPSCGVQSVIDD58 pKa = 4.01PFEE61 pKa = 4.15DD62 pKa = 3.4TRR64 pKa = 4.57

Molecular weight: 7.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A075TTS0|A0A075TTS0_9CORY Delta-aminolevulinic acid dehydratase OS=Corynebacterium atypicum OX=191610 GN=CATYP_01650 PE=3 SV=1
MM1 pKa = 7.47SKK3 pKa = 10.58GKK5 pKa = 8.48RR6 pKa = 11.84TYY8 pKa = 10.09QPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84KK18 pKa = 8.01HH19 pKa = 4.51GFRR22 pKa = 11.84IRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIIAARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.72GRR42 pKa = 11.84AKK44 pKa = 9.63LTAA47 pKa = 4.21

Molecular weight: 5.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1533

0

1533

491884

40

1636

320.9

34.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.883 ± 0.097

0.759 ± 0.016

5.972 ± 0.054

6.494 ± 0.066

3.229 ± 0.038

8.753 ± 0.056

2.131 ± 0.026

4.525 ± 0.047

3.064 ± 0.047

9.406 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.014 ± 0.029

2.448 ± 0.03

5.18 ± 0.05

3.404 ± 0.034

6.873 ± 0.062

5.357 ± 0.035

5.665 ± 0.042

8.408 ± 0.061

1.323 ± 0.025

2.112 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski