Ktedonobacter racemifer DSM 44963

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter; Ktedonobacter racemifer

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11211 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D6TY45|D6TY45_9CHLR Uncharacterized protein OS=Ktedonobacter racemifer DSM 44963 OX=485913 GN=Krac_6180 PE=4 SV=1
MM1 pKa = 7.27QIAALQEE8 pKa = 4.29GSASDD13 pKa = 3.56EE14 pKa = 3.94FAIYY18 pKa = 9.91SWPEE22 pKa = 3.39RR23 pKa = 11.84QLLQRR28 pKa = 11.84YY29 pKa = 7.96PVMPALDD36 pKa = 4.11GWPVDD41 pKa = 4.06MVLSPQDD48 pKa = 3.65NLALCMFANEE58 pKa = 4.79DD59 pKa = 3.65DD60 pKa = 4.12VSFEE64 pKa = 4.62FIDD67 pKa = 3.41ITSQGVSQDD76 pKa = 2.85LHH78 pKa = 7.67LYY80 pKa = 9.97KK81 pKa = 10.82GAII84 pKa = 3.65

Molecular weight: 9.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D6TXN5|D6TXN5_9CHLR Uncharacterized protein OS=Ktedonobacter racemifer DSM 44963 OX=485913 GN=Krac_3999 PE=4 SV=1
MM1 pKa = 7.15FVLSRR6 pKa = 11.84RR7 pKa = 11.84QRR9 pKa = 11.84RR10 pKa = 11.84VMMRR14 pKa = 11.84FLQALAVQGVVLVVRR29 pKa = 11.84HH30 pKa = 5.02WLHH33 pKa = 5.28WW34 pKa = 3.94

Molecular weight: 4.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11211

0

11211

3395074

30

3346

302.8

33.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.38 ± 0.025

1.117 ± 0.008

4.511 ± 0.016

6.099 ± 0.029

3.604 ± 0.015

7.039 ± 0.02

2.743 ± 0.011

5.322 ± 0.019

3.569 ± 0.023

11.154 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.209 ± 0.009

3.032 ± 0.016

5.102 ± 0.019

5.205 ± 0.02

6.618 ± 0.023

6.126 ± 0.021

5.889 ± 0.019

6.668 ± 0.019

1.594 ± 0.011

3.019 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski