Penaeus vannamei (Whiteleg shrimp) (Litopenaeus vannamei)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata;

Average proteome isoelectric point is 7.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 25399 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A423TD78|A0A423TD78_PENVA Uncharacterized protein OS=Penaeus vannamei OX=6689 GN=C7M84_007163 PE=3 SV=1
MM1 pKa = 7.28FLSSHH6 pKa = 7.06LCPLSYY12 pKa = 10.96SSLSLFLDD20 pKa = 3.96SLSSPLSCLALPWLEE35 pKa = 3.82ITYY38 pKa = 7.52EE39 pKa = 4.08TTDD42 pKa = 3.08GKK44 pKa = 11.2KK45 pKa = 8.81FTVQGKK51 pKa = 9.77EE52 pKa = 3.69GDD54 pKa = 3.68NLLDD58 pKa = 3.31IVINNDD64 pKa = 2.46VDD66 pKa = 4.62LDD68 pKa = 4.04GFGACEE74 pKa = 3.88GTLACSTCHH83 pKa = 7.38LIFKK87 pKa = 10.57KK88 pKa = 10.58EE89 pKa = 3.86DD90 pKa = 3.24FDD92 pKa = 6.26RR93 pKa = 11.84IEE95 pKa = 4.32EE96 pKa = 4.27PSTDD100 pKa = 3.85EE101 pKa = 4.17EE102 pKa = 6.21LDD104 pKa = 3.8MLDD107 pKa = 3.84LAYY110 pKa = 10.69GLTDD114 pKa = 3.18TT115 pKa = 5.38

Molecular weight: 12.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A423U557|A0A423U557_PENVA Crustacyanin subunit A OS=Penaeus vannamei OX=6689 GN=C7M84_023007 PE=3 SV=1
MM1 pKa = 7.62VDD3 pKa = 3.32EE4 pKa = 4.64VKK6 pKa = 10.39SARR9 pKa = 11.84RR10 pKa = 11.84KK11 pKa = 9.71VLSLHH16 pKa = 6.79LSLHH20 pKa = 6.47LSASPLSPLASPLASPPRR38 pKa = 11.84PLRR41 pKa = 11.84FTLATSPSLNLSLHH55 pKa = 6.39LSLFTSRR62 pKa = 11.84LHH64 pKa = 6.66LSLPSRR70 pKa = 11.84SPLRR74 pKa = 11.84FTSRR78 pKa = 11.84SLASTLSALDD88 pKa = 3.44TSRR91 pKa = 11.84LTFLALSPLASSLQTSRR108 pKa = 11.84FHH110 pKa = 6.65LRR112 pKa = 11.84SSPSPLASPLVHH124 pKa = 6.9LSLHH128 pKa = 6.42LSFTSRR134 pKa = 11.84FTSRR138 pKa = 11.84FTSRR142 pKa = 11.84FTSRR146 pKa = 11.84TSRR149 pKa = 11.84FNLSRR154 pKa = 11.84SALFASPLAQPLASSFTSRR173 pKa = 11.84QLRR176 pKa = 11.84SPLASPLSFTSRR188 pKa = 11.84LLSLHH193 pKa = 6.69LSLHH197 pKa = 6.16LVASHH202 pKa = 7.19LSLTSRR208 pKa = 11.84FTSRR212 pKa = 11.84PPSRR216 pKa = 11.84FISLHH221 pKa = 5.19PSRR224 pKa = 11.84FNLSSPLASPLVSPLASPLVHH245 pKa = 6.82LLASRR250 pKa = 11.84SRR252 pKa = 11.84FTSRR256 pKa = 11.84FTSPLVSTSSLHH268 pKa = 6.84LSLHH272 pKa = 6.46LSLSRR277 pKa = 11.84PLASPHH283 pKa = 6.23LRR285 pKa = 11.84FTFVRR290 pKa = 11.84LSLSPLASPLLQHH303 pKa = 6.66SRR305 pKa = 11.84FTSRR309 pKa = 11.84FTSRR313 pKa = 11.84FISSRR318 pKa = 11.84SSLHH322 pKa = 6.42LSLHH326 pKa = 6.39LSLHH330 pKa = 5.96LASPLASPLASPLASPLASPLASPLASPLASPLASPLASPLASPLALAFTSRR382 pKa = 11.84ASPPLTSRR390 pKa = 11.84FTSRR394 pKa = 11.84FTSLALTSRR403 pKa = 11.84FTSRR407 pKa = 11.84FTSRR411 pKa = 11.84SPLSSPLSPLASPLASPSRR430 pKa = 11.84FTSRR434 pKa = 11.84FTSLHH439 pKa = 6.16LSLTSRR445 pKa = 11.84FTSRR449 pKa = 11.84FTSRR453 pKa = 11.84FTLAFTSRR461 pKa = 11.84SSPLFLASPLAFSLSLRR478 pKa = 11.84LSLHH482 pKa = 6.49LSLHH486 pKa = 6.37LAPLASTSASRR497 pKa = 11.84LTLTSRR503 pKa = 11.84FTLASPSSLLASPLASPLVSPLASLSLHH531 pKa = 5.6FTLSLHH537 pKa = 6.91LSLHH541 pKa = 6.03LCFTSLHH548 pKa = 6.2LSLHH552 pKa = 6.3LSLHH556 pKa = 6.37LSLHH560 pKa = 6.67LSPHH564 pKa = 6.25SPLASPLARR573 pKa = 11.84SRR575 pKa = 11.84FASRR579 pKa = 11.84SPLRR583 pKa = 11.84SSRR586 pKa = 11.84FNLSPQLSFTSRR598 pKa = 11.84FTSRR602 pKa = 11.84SPSSPLASPLARR614 pKa = 11.84LSLLSLTSRR623 pKa = 11.84FHH625 pKa = 7.51LSLLTSRR632 pKa = 11.84FTLASPLLHH641 pKa = 7.18LSLTSLAFTSRR652 pKa = 11.84FHH654 pKa = 6.91PLGFTSRR661 pKa = 11.84FTLSLSPLASSSSLRR676 pKa = 11.84SPSPLVSPLVSPLASPSLSPLVHH699 pKa = 6.83LSLTSRR705 pKa = 11.84FPSLASTSRR714 pKa = 11.84FTSRR718 pKa = 11.84FTSPASPLVSPLASPLASPLAFSRR742 pKa = 11.84FTSRR746 pKa = 11.84FTSRR750 pKa = 11.84FLALFSSFPAGG761 pKa = 3.22

Molecular weight: 81.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

25399

0

25399

13085305

52

11752

515.2

56.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.592 ± 0.025

1.915 ± 0.012

4.093 ± 0.02

5.183 ± 0.035

4.316 ± 0.029

5.657 ± 0.029

3.201 ± 0.021

3.736 ± 0.016

3.929 ± 0.024

10.781 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.685 ± 0.009

3.055 ± 0.016

10.108 ± 0.064

3.702 ± 0.021

6.188 ± 0.028

10.942 ± 0.046

6.016 ± 0.033

5.499 ± 0.023

1.039 ± 0.007

2.357 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski