Natrinema altunense JCM 12890

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema; Natrinema altunense

Average proteome isoelectric point is 4.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3732 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L9ZLR5|L9ZLR5_9EURY Glucose 1-dehydrogenase OS=Natrinema altunense JCM 12890 OX=1227494 GN=gdh PE=3 SV=1
MM1 pKa = 7.72LDD3 pKa = 3.47VGDD6 pKa = 4.25EE7 pKa = 4.08APEE10 pKa = 4.12FEE12 pKa = 5.06LQNQHH17 pKa = 5.8GEE19 pKa = 4.23TVRR22 pKa = 11.84RR23 pKa = 11.84SDD25 pKa = 3.9FEE27 pKa = 4.02GQRR30 pKa = 11.84LVVYY34 pKa = 7.12FYY36 pKa = 10.88PRR38 pKa = 11.84ANTDD42 pKa = 2.45GCTTEE47 pKa = 4.57ACGFNDD53 pKa = 3.85TLPQFEE59 pKa = 4.41AHH61 pKa = 6.71DD62 pKa = 3.89VAVVGISDD70 pKa = 5.25DD71 pKa = 4.02PVDD74 pKa = 5.88DD75 pKa = 4.28IADD78 pKa = 4.39FAADD82 pKa = 3.57YY83 pKa = 11.16DD84 pKa = 4.58LEE86 pKa = 5.8FDD88 pKa = 4.43LLSDD92 pKa = 3.7EE93 pKa = 4.68FGEE96 pKa = 4.68VATLYY101 pKa = 10.78DD102 pKa = 3.95SYY104 pKa = 11.76GEE106 pKa = 3.91KK107 pKa = 10.8QMFGNTFDD115 pKa = 3.69GVFRR119 pKa = 11.84NTYY122 pKa = 9.66VVGPDD127 pKa = 3.3GRR129 pKa = 11.84IEE131 pKa = 3.71AAYY134 pKa = 10.04EE135 pKa = 4.17GVSPDD140 pKa = 3.09GHH142 pKa = 7.2ADD144 pKa = 3.3TVLADD149 pKa = 4.38LVPADD154 pKa = 3.72VTHH157 pKa = 7.12

Molecular weight: 17.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L9ZES4|L9ZES4_9EURY Uncharacterized protein OS=Natrinema altunense JCM 12890 OX=1227494 GN=C485_18112 PE=4 SV=1
MM1 pKa = 7.51LKK3 pKa = 9.99SCLFRR8 pKa = 11.84VSIDD12 pKa = 3.03ATTADD17 pKa = 4.17PPAAGSKK24 pKa = 9.47FLPRR28 pKa = 11.84AVGEE32 pKa = 4.22VRR34 pKa = 11.84HH35 pKa = 5.71MLRR38 pKa = 11.84EE39 pKa = 3.92LLIGFGVVEE48 pKa = 4.1ILKK51 pKa = 9.67PEE53 pKa = 4.76PIIRR57 pKa = 11.84LCEE60 pKa = 4.21RR61 pKa = 11.84IGLRR65 pKa = 11.84NPGKK69 pKa = 8.22TEE71 pKa = 3.75RR72 pKa = 11.84RR73 pKa = 11.84PLALTGARR81 pKa = 11.84LEE83 pKa = 4.16GLVFVWLLVRR93 pKa = 11.84GRR95 pKa = 11.84QGSTLVSALLGAAGLALVLVPRR117 pKa = 11.84PIIEE121 pKa = 4.52LSQHH125 pKa = 5.54LVYY128 pKa = 11.09AEE130 pKa = 3.91TDD132 pKa = 3.43RR133 pKa = 11.84LEE135 pKa = 4.21LQPWVVPAARR145 pKa = 11.84LLGVLYY151 pKa = 8.97LTVTLLSQRR160 pKa = 11.84PGTEE164 pKa = 3.83TTDD167 pKa = 3.46EE168 pKa = 4.6DD169 pKa = 4.49RR170 pKa = 11.84DD171 pKa = 3.84GADD174 pKa = 3.25RR175 pKa = 11.84SPRR178 pKa = 11.84WRR180 pKa = 11.84RR181 pKa = 11.84RR182 pKa = 11.84RR183 pKa = 11.84SGG185 pKa = 3.06

Molecular weight: 20.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3732

0

3732

1035287

28

1725

277.4

30.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.991 ± 0.063

0.757 ± 0.012

8.707 ± 0.052

8.61 ± 0.054

3.21 ± 0.026

8.42 ± 0.041

1.982 ± 0.02

4.366 ± 0.031

1.719 ± 0.029

8.87 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.723 ± 0.018

2.241 ± 0.024

4.668 ± 0.029

2.355 ± 0.025

6.751 ± 0.042

5.52 ± 0.029

6.629 ± 0.031

8.658 ± 0.04

1.118 ± 0.016

2.704 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski