Pandoravirus inopinatum

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses; Pandoravirus

Average proteome isoelectric point is 7.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1839 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B5IYE6|A0A0B5IYE6_9VIRU Uncharacterized protein OS=Pandoravirus inopinatum OX=1605721 PE=4 SV=1
MM1 pKa = 7.02TALGKK6 pKa = 10.46RR7 pKa = 11.84ILEE10 pKa = 4.1IVSTRR15 pKa = 11.84VEE17 pKa = 4.58DD18 pKa = 4.84DD19 pKa = 4.12DD20 pKa = 4.1GTPAVPLAKK29 pKa = 9.93RR30 pKa = 11.84PRR32 pKa = 11.84CDD34 pKa = 3.34NMPEE38 pKa = 4.18PGCAGIAVGDD48 pKa = 3.55TWNGIEE54 pKa = 4.69CDD56 pKa = 3.81EE57 pKa = 4.74EE58 pKa = 4.51DD59 pKa = 4.41VEE61 pKa = 4.61ARR63 pKa = 11.84DD64 pKa = 4.1HH65 pKa = 6.03IVEE68 pKa = 4.22VVLAGGALATVLDD81 pKa = 4.23QASCHH86 pKa = 6.51HH87 pKa = 7.13IDD89 pKa = 4.07LALIQLFDD97 pKa = 4.43DD98 pKa = 4.06CTALARR104 pKa = 11.84LCRR107 pKa = 11.84AIAPSLPQALPAVLAADD124 pKa = 4.09SEE126 pKa = 4.49PDD128 pKa = 2.93KK129 pKa = 10.91TVYY132 pKa = 10.38HH133 pKa = 5.02VTIDD137 pKa = 3.76ALLCRR142 pKa = 11.84AAQQGRR148 pKa = 11.84PAVLAVLMRR157 pKa = 11.84HH158 pKa = 6.01LADD161 pKa = 4.24EE162 pKa = 4.44YY163 pKa = 11.35DD164 pKa = 3.49VARR167 pKa = 11.84ALEE170 pKa = 4.2MADD173 pKa = 4.7EE174 pKa = 4.71EE175 pKa = 4.97DD176 pKa = 4.27DD177 pKa = 3.86PAAIEE182 pKa = 4.99LIAEE186 pKa = 4.49TYY188 pKa = 10.41EE189 pKa = 4.09KK190 pKa = 10.87DD191 pKa = 3.58AGKK194 pKa = 10.34DD195 pKa = 3.27DD196 pKa = 3.79TGEE199 pKa = 4.72DD200 pKa = 3.67DD201 pKa = 4.04TGEE204 pKa = 4.77DD205 pKa = 3.68DD206 pKa = 3.75TGEE209 pKa = 4.69DD210 pKa = 3.38EE211 pKa = 4.4TGSCRR216 pKa = 11.84RR217 pKa = 11.84IAYY220 pKa = 8.84VALTCAVHH228 pKa = 6.23SSRR231 pKa = 11.84VALIHH236 pKa = 6.86RR237 pKa = 11.84LVDD240 pKa = 3.14KK241 pKa = 11.17CDD243 pKa = 3.4VEE245 pKa = 5.08DD246 pKa = 3.67VHH248 pKa = 8.1GLLDD252 pKa = 4.45DD253 pKa = 4.32CLEE256 pKa = 4.9DD257 pKa = 4.78GDD259 pKa = 4.59VFAALWQHH267 pKa = 6.65AVLCAHH273 pKa = 7.62AYY275 pKa = 8.98AASLPPCPALDD286 pKa = 3.72HH287 pKa = 6.35LTLQIANGEE296 pKa = 4.19PCADD300 pKa = 3.17MCASYY305 pKa = 10.99EE306 pKa = 4.15PADD309 pKa = 4.17SDD311 pKa = 5.13NDD313 pKa = 3.99TDD315 pKa = 6.49DD316 pKa = 5.31DD317 pKa = 4.39TDD319 pKa = 5.77DD320 pKa = 6.2DD321 pKa = 5.5DD322 pKa = 7.18GGDD325 pKa = 4.1NGNDD329 pKa = 4.38DD330 pKa = 5.53DD331 pKa = 6.73DD332 pKa = 6.51NDD334 pKa = 4.33DD335 pKa = 4.17ADD337 pKa = 4.06QGSHH341 pKa = 5.42EE342 pKa = 4.23QAQQ345 pKa = 3.42

Molecular weight: 36.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B5J4K2|A0A0B5J4K2_9VIRU Uncharacterized protein OS=Pandoravirus inopinatum OX=1605721 PE=4 SV=1
MM1 pKa = 7.09TWFFATVAGGGLGVGGRR18 pKa = 11.84AAGVRR23 pKa = 11.84PLCRR27 pKa = 11.84AVILALCRR35 pKa = 11.84QTRR38 pKa = 11.84IRR40 pKa = 11.84RR41 pKa = 11.84VSRR44 pKa = 11.84ADD46 pKa = 3.57FAPSSPLLIFFPIGHH61 pKa = 7.73LRR63 pKa = 11.84RR64 pKa = 11.84QTRR67 pKa = 11.84VWSRR71 pKa = 11.84LSTATVSFPFRR82 pKa = 11.84LFFQTLPFSNWAAVVAHH99 pKa = 6.98APPAEE104 pKa = 4.22ATQKK108 pKa = 8.9VAKK111 pKa = 10.49NFFGRR116 pKa = 11.84FAMIIFPFFFLIGGGAFSWGRR137 pKa = 11.84RR138 pKa = 11.84RR139 pKa = 11.84QKK141 pKa = 8.44STSRR145 pKa = 11.84RR146 pKa = 11.84RR147 pKa = 11.84VLPFAWPTPRR157 pKa = 11.84AAFVPFALQPSKK169 pKa = 10.79INRR172 pKa = 11.84FGAWHH177 pKa = 6.11MSKK180 pKa = 8.5ITSNIANGLPLARR193 pKa = 11.84LKK195 pKa = 10.43AQCRR199 pKa = 11.84QATFFLFKK207 pKa = 9.74WKK209 pKa = 9.73HH210 pKa = 4.24ARR212 pKa = 11.84KK213 pKa = 9.37KK214 pKa = 10.04KK215 pKa = 9.53RR216 pKa = 11.84PARR219 pKa = 11.84RR220 pKa = 11.84RR221 pKa = 11.84LL222 pKa = 3.29

Molecular weight: 25.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1839

0

1839

542761

99

1504

295.1

32.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.172 ± 0.083

2.948 ± 0.044

6.738 ± 0.066

3.481 ± 0.039

2.969 ± 0.047

7.894 ± 0.065

3.177 ± 0.039

3.154 ± 0.027

2.566 ± 0.046

8.146 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.056 ± 0.022

2.173 ± 0.028

6.652 ± 0.054

2.736 ± 0.034

9.044 ± 0.059

6.03 ± 0.057

5.852 ± 0.051

7.11 ± 0.039

2.122 ± 0.036

1.978 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski