Chitinimonas taiwanensis DSM 18899

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Chitinimonas; Chitinimonas taiwanensis

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3699 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1K2HPR8|A0A1K2HPR8_9BURK Chromosome segregation ATPase OS=Chitinimonas taiwanensis DSM 18899 OX=1121279 GN=SAMN02745887_03070 PE=4 SV=1
MM1 pKa = 7.55NKK3 pKa = 9.79LFKK6 pKa = 10.49NALIAIGATLAIPAASAAVIDD27 pKa = 4.6FDD29 pKa = 4.92SLSPDD34 pKa = 2.95IYY36 pKa = 10.93AAGDD40 pKa = 3.59FFSDD44 pKa = 3.13GNYY47 pKa = 10.18KK48 pKa = 9.09FTVGAGPNDD57 pKa = 3.53TGFAGAIGSNVADD70 pKa = 3.48ACFLIDD76 pKa = 4.59CPVGNDD82 pKa = 3.05SQYY85 pKa = 11.74YY86 pKa = 10.35LGLNDD91 pKa = 3.74GSLNIASDD99 pKa = 3.2VGMGFTLGKK108 pKa = 10.35FEE110 pKa = 4.98ASFVAPVVANIPFSVARR127 pKa = 11.84LLISAQDD134 pKa = 3.87YY135 pKa = 11.18LGNTYY140 pKa = 8.3NTSVEE145 pKa = 4.35LPGQNANGFWEE156 pKa = 4.64FSGFAFDD163 pKa = 5.62APGLILKK170 pKa = 9.73QIAFTACLTDD180 pKa = 3.41VNGACVPLGEE190 pKa = 4.41NQAQFGLDD198 pKa = 3.53NLNVSTVPEE207 pKa = 4.25PASALLIALGLAGMGIAYY225 pKa = 9.53RR226 pKa = 11.84RR227 pKa = 11.84KK228 pKa = 8.97QAAA231 pKa = 3.07

Molecular weight: 23.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1K2HLW9|A0A1K2HLW9_9BURK C4-dicarboxylate transporter DctM subunit OS=Chitinimonas taiwanensis DSM 18899 OX=1121279 GN=SAMN02745887_02613 PE=4 SV=1
MM1 pKa = 7.62LLLSPWVWLLAVKK14 pKa = 10.37RR15 pKa = 11.84KK16 pKa = 9.89KK17 pKa = 10.7LLLKK21 pKa = 10.41PRR23 pKa = 11.84LLKK26 pKa = 10.92LLLLKK31 pKa = 10.83LLLLRR36 pKa = 11.84PLTLLLRR43 pKa = 11.84PLTLLLLRR51 pKa = 11.84LLTLLLLRR59 pKa = 11.84PLTLLLLRR67 pKa = 11.84LLTLLPLLLKK77 pKa = 10.62LRR79 pKa = 11.84SSNSASQAIAA89 pKa = 3.2

Molecular weight: 10.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3699

0

3699

1215398

39

2429

328.6

35.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.8 ± 0.063

0.905 ± 0.011

5.172 ± 0.028

5.522 ± 0.039

3.528 ± 0.027

7.879 ± 0.037

2.213 ± 0.02

4.45 ± 0.029

3.516 ± 0.039

11.99 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.199 ± 0.019

2.758 ± 0.027

4.981 ± 0.03

4.682 ± 0.037

6.563 ± 0.04

5.661 ± 0.033

4.43 ± 0.031

6.741 ± 0.034

1.496 ± 0.019

2.515 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski