Geodermatophilus sabuli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Geodermatophilales; Geodermatophilaceae; Geodermatophilus

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5204 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A285EFZ0|A0A285EFZ0_9ACTN Acyl-CoA thioesterase OS=Geodermatophilus sabuli OX=1564158 GN=SAMN06893097_105292 PE=4 SV=1
MM1 pKa = 7.43KK2 pKa = 10.3LSKK5 pKa = 9.72RR6 pKa = 11.84TAALIATGLSGVMVLSACGGGDD28 pKa = 4.1DD29 pKa = 4.83EE30 pKa = 5.76GSSSADD36 pKa = 2.87GGSFSIYY43 pKa = 9.67IGEE46 pKa = 4.3PEE48 pKa = 4.27NPLMPGNTNEE58 pKa = 4.29TEE60 pKa = 4.22GGQVLDD66 pKa = 3.86SLFTGLVQYY75 pKa = 10.87DD76 pKa = 3.94PEE78 pKa = 4.34TNEE81 pKa = 3.74AAFTGVAEE89 pKa = 4.77SIEE92 pKa = 4.73SDD94 pKa = 4.19DD95 pKa = 3.61QTTWTVKK102 pKa = 10.86LNDD105 pKa = 2.97GWTFHH110 pKa = 7.46DD111 pKa = 5.08GSPVNAQSFVDD122 pKa = 3.58AWNYY126 pKa = 7.22TAYY129 pKa = 10.76SPNAQGNSYY138 pKa = 10.34FFANIVGYY146 pKa = 10.98GDD148 pKa = 3.7LQAPEE153 pKa = 4.64AGGDD157 pKa = 3.71PVATEE162 pKa = 3.88MSGLRR167 pKa = 11.84VVDD170 pKa = 4.26DD171 pKa = 3.66LTFEE175 pKa = 4.42VTLSSPYY182 pKa = 10.13AQWPTTVGYY191 pKa = 7.89TAFFPLPPAFFDD203 pKa = 4.09DD204 pKa = 4.05PAAFGEE210 pKa = 4.21QPIGNGPFQAVEE222 pKa = 4.13PFVPGQGVTLTRR234 pKa = 11.84YY235 pKa = 9.96EE236 pKa = 4.45DD237 pKa = 3.68FAGDD241 pKa = 3.71EE242 pKa = 4.1PAKK245 pKa = 10.71AEE247 pKa = 4.12SVEE250 pKa = 3.61YY251 pKa = 9.76RR252 pKa = 11.84VYY254 pKa = 11.0VEE256 pKa = 4.47QDD258 pKa = 2.75TAYY261 pKa = 9.82TDD263 pKa = 3.77LQGGSLDD270 pKa = 4.88IMDD273 pKa = 5.5TLPPDD278 pKa = 5.17AIASAEE284 pKa = 4.19SEE286 pKa = 3.99FGDD289 pKa = 4.44RR290 pKa = 11.84YY291 pKa = 10.57IEE293 pKa = 4.07TAQGDD298 pKa = 3.84ITSLGFPTYY307 pKa = 9.52DD308 pKa = 4.34QRR310 pKa = 11.84FADD313 pKa = 3.84PNVRR317 pKa = 11.84KK318 pKa = 9.59AFSMAIDD325 pKa = 3.7RR326 pKa = 11.84QAISDD331 pKa = 4.26AIFNGTRR338 pKa = 11.84TPATSFISPVVPGYY352 pKa = 10.64RR353 pKa = 11.84EE354 pKa = 4.25GACEE358 pKa = 3.62ACEE361 pKa = 4.41LNVEE365 pKa = 4.42EE366 pKa = 5.48ANSLLDD372 pKa = 3.3AAGFDD377 pKa = 3.54RR378 pKa = 11.84SQPVDD383 pKa = 2.84LWFNAGAGHH392 pKa = 6.64DD393 pKa = 3.49AWMEE397 pKa = 3.82AVGNQLRR404 pKa = 11.84EE405 pKa = 4.15NLGVEE410 pKa = 3.96YY411 pKa = 10.03QLRR414 pKa = 11.84GDD416 pKa = 4.32LPQAEE421 pKa = 4.58FLPLKK426 pKa = 9.57DD427 pKa = 3.92AKK429 pKa = 11.18GMTGPFRR436 pKa = 11.84DD437 pKa = 4.18AWIMDD442 pKa = 3.57YY443 pKa = 10.75PVAEE447 pKa = 4.34NFLGPLYY454 pKa = 10.76SSVALPPAGSNYY466 pKa = 9.09TFYY469 pKa = 11.36SNPQFDD475 pKa = 4.07QLLQQGNAAASDD487 pKa = 4.06DD488 pKa = 4.19EE489 pKa = 5.4AVAAYY494 pKa = 9.26QAAEE498 pKa = 4.27DD499 pKa = 4.12VLIADD504 pKa = 5.16LPSAPLFYY512 pKa = 10.72RR513 pKa = 11.84LNQGAHH519 pKa = 5.92SEE521 pKa = 4.17NVDD524 pKa = 3.37NVIIDD529 pKa = 3.34AFGRR533 pKa = 11.84IDD535 pKa = 3.23AAAVEE540 pKa = 4.93VVSS543 pKa = 4.44

Molecular weight: 58.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A285E903|A0A285E903_9ACTN Drug resistance transporter EmrB/QacA subfamily OS=Geodermatophilus sabuli OX=1564158 GN=SAMN06893097_102205 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.51LLKK22 pKa = 8.15KK23 pKa = 9.25TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.81KK32 pKa = 9.63

Molecular weight: 4.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5204

0

5204

1639597

29

2138

315.1

33.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.326 ± 0.054

0.718 ± 0.009

6.187 ± 0.024

5.586 ± 0.029

2.611 ± 0.018

9.659 ± 0.03

2.076 ± 0.015

2.794 ± 0.022

1.265 ± 0.017

10.643 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.645 ± 0.013

1.433 ± 0.016

6.322 ± 0.031

2.686 ± 0.019

8.268 ± 0.037

4.758 ± 0.022

5.971 ± 0.025

9.81 ± 0.03

1.476 ± 0.014

1.766 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski