Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_481

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.257AlaAla: 7.257 ± 1.093
1.451AlaCys: 1.451 ± 0.97
3.628AlaAsp: 3.628 ± 1.761
5.08AlaGlu: 5.08 ± 3.182
2.903AlaPhe: 2.903 ± 2.073
2.177AlaGly: 2.177 ± 1.488
0.0AlaHis: 0.0 ± 0.0
3.628AlaIle: 3.628 ± 1.545
3.628AlaLys: 3.628 ± 1.103
7.257AlaLeu: 7.257 ± 0.809
2.903AlaMet: 2.903 ± 3.409
6.531AlaAsn: 6.531 ± 2.685
3.628AlaPro: 3.628 ± 1.328
2.903AlaGln: 2.903 ± 1.237
4.354AlaArg: 4.354 ± 1.8
3.628AlaSer: 3.628 ± 2.452
6.531AlaThr: 6.531 ± 1.589
2.177AlaVal: 2.177 ± 1.555
1.451AlaTrp: 1.451 ± 1.036
6.531AlaTyr: 6.531 ± 3.057
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.726CysAsp: 0.726 ± 0.518
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.726CysGly: 0.726 ± 0.65
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.726CysLys: 0.726 ± 0.65
0.0CysLeu: 0.0 ± 0.0
0.726CysMet: 0.726 ± 0.65
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
2.903CysArg: 2.903 ± 1.175
0.726CysSer: 0.726 ± 0.65
0.726CysThr: 0.726 ± 0.518
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.08AspAla: 5.08 ± 2.032
0.0AspCys: 0.0 ± 0.0
1.451AspAsp: 1.451 ± 1.06
0.726AspGlu: 0.726 ± 0.518
2.177AspPhe: 2.177 ± 0.914
2.177AspGly: 2.177 ± 1.138
2.177AspHis: 2.177 ± 1.555
3.628AspIle: 3.628 ± 2.053
2.177AspLys: 2.177 ± 0.767
5.08AspLeu: 5.08 ± 2.121
0.726AspMet: 0.726 ± 0.867
2.903AspAsn: 2.903 ± 0.556
0.726AspPro: 0.726 ± 0.834
5.08AspGln: 5.08 ± 0.503
0.0AspArg: 0.0 ± 0.0
0.726AspSer: 0.726 ± 0.852
4.354AspThr: 4.354 ± 1.134
2.177AspVal: 2.177 ± 0.914
0.726AspTrp: 0.726 ± 0.852
2.903AspTyr: 2.903 ± 1.2
0.0AspXaa: 0.0 ± 0.0
Glu
7.257GluAla: 7.257 ± 1.398
0.0GluCys: 0.0 ± 0.0
1.451GluAsp: 1.451 ± 1.291
5.806GluGlu: 5.806 ± 2.707
5.806GluPhe: 5.806 ± 1.977
3.628GluGly: 3.628 ± 2.833
5.08GluHis: 5.08 ± 1.341
8.708GluIle: 8.708 ± 2.985
2.903GluLys: 2.903 ± 1.402
1.451GluLeu: 1.451 ± 1.285
5.08GluMet: 5.08 ± 2.002
7.983GluAsn: 7.983 ± 2.474
2.903GluPro: 2.903 ± 2.12
5.806GluGln: 5.806 ± 1.412
2.903GluArg: 2.903 ± 1.175
3.628GluSer: 3.628 ± 1.154
5.08GluThr: 5.08 ± 1.923
2.177GluVal: 2.177 ± 1.555
2.903GluTrp: 2.903 ± 0.769
4.354GluTyr: 4.354 ± 1.188
0.0GluXaa: 0.0 ± 0.0
Phe
2.177PheAla: 2.177 ± 1.555
0.0PheCys: 0.0 ± 0.0
0.726PheAsp: 0.726 ± 0.518
2.903PheGlu: 2.903 ± 0.769
1.451PhePhe: 1.451 ± 1.036
2.903PheGly: 2.903 ± 1.359
0.726PheHis: 0.726 ± 0.65
4.354PheIle: 4.354 ± 1.909
0.726PheLys: 0.726 ± 0.518
0.726PheLeu: 0.726 ± 0.518
1.451PheMet: 1.451 ± 0.6
2.177PheAsn: 2.177 ± 1.123
1.451PhePro: 1.451 ± 0.6
0.726PheGln: 0.726 ± 0.518
2.903PheArg: 2.903 ± 1.601
2.177PheSer: 2.177 ± 1.193
2.177PheThr: 2.177 ± 1.555
1.451PheVal: 1.451 ± 0.6
0.726PheTrp: 0.726 ± 0.65
2.903PheTyr: 2.903 ± 1.301
0.0PheXaa: 0.0 ± 0.0
Gly
4.354GlyAla: 4.354 ± 2.982
1.451GlyCys: 1.451 ± 0.6
7.983GlyAsp: 7.983 ± 1.334
10.16GlyGlu: 10.16 ± 1.87
0.0GlyPhe: 0.0 ± 0.0
5.08GlyGly: 5.08 ± 2.251
0.726GlyHis: 0.726 ± 0.518
5.806GlyIle: 5.806 ± 1.903
4.354GlyLys: 4.354 ± 0.825
5.08GlyLeu: 5.08 ± 0.927
1.451GlyMet: 1.451 ± 0.717
1.451GlyAsn: 1.451 ± 0.717
0.726GlyPro: 0.726 ± 0.518
1.451GlyGln: 1.451 ± 1.06
1.451GlyArg: 1.451 ± 1.06
5.806GlySer: 5.806 ± 3.297
7.983GlyThr: 7.983 ± 2.878
1.451GlyVal: 1.451 ± 0.701
0.726GlyTrp: 0.726 ± 0.518
4.354GlyTyr: 4.354 ± 1.121
0.0GlyXaa: 0.0 ± 0.0
His
0.726HisAla: 0.726 ± 0.65
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.726HisGlu: 0.726 ± 0.518
0.0HisPhe: 0.0 ± 0.0
0.726HisGly: 0.726 ± 0.518
0.726HisHis: 0.726 ± 0.518
1.451HisIle: 1.451 ± 0.6
0.726HisLys: 0.726 ± 0.65
0.726HisLeu: 0.726 ± 0.518
1.451HisMet: 1.451 ± 0.76
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
0.726HisGln: 0.726 ± 0.518
0.0HisArg: 0.0 ± 0.0
2.903HisSer: 2.903 ± 0.976
0.0HisThr: 0.0 ± 0.0
0.0HisVal: 0.0 ± 0.0
1.451HisTrp: 1.451 ± 1.036
1.451HisTyr: 1.451 ± 1.299
0.0HisXaa: 0.0 ± 0.0
Ile
1.451IleAla: 1.451 ± 1.036
0.0IleCys: 0.0 ± 0.0
5.08IleAsp: 5.08 ± 1.468
3.628IleGlu: 3.628 ± 1.78
2.177IlePhe: 2.177 ± 1.555
6.531IleGly: 6.531 ± 2.538
0.0IleHis: 0.0 ± 0.0
5.806IleIle: 5.806 ± 1.837
8.708IleLys: 8.708 ± 3.682
2.903IleLeu: 2.903 ± 1.983
3.628IleMet: 3.628 ± 1.897
3.628IleAsn: 3.628 ± 1.457
5.08IlePro: 5.08 ± 1.681
3.628IleGln: 3.628 ± 1.355
2.903IleArg: 2.903 ± 0.769
2.903IleSer: 2.903 ± 1.175
5.08IleThr: 5.08 ± 1.457
2.177IleVal: 2.177 ± 1.646
1.451IleTrp: 1.451 ± 0.6
5.08IleTyr: 5.08 ± 1.953
0.0IleXaa: 0.0 ± 0.0
Lys
4.354LysAla: 4.354 ± 2.296
0.0LysCys: 0.0 ± 0.0
3.628LysAsp: 3.628 ± 1.44
7.983LysGlu: 7.983 ± 2.453
2.177LysPhe: 2.177 ± 0.908
5.806LysGly: 5.806 ± 2.401
0.726LysHis: 0.726 ± 0.518
5.08LysIle: 5.08 ± 2.823
4.354LysLys: 4.354 ± 1.347
3.628LysLeu: 3.628 ± 1.096
1.451LysMet: 1.451 ± 1.333
2.177LysAsn: 2.177 ± 1.405
1.451LysPro: 1.451 ± 1.299
2.177LysGln: 2.177 ± 1.138
2.903LysArg: 2.903 ± 1.175
3.628LysSer: 3.628 ± 1.562
4.354LysThr: 4.354 ± 1.485
3.628LysVal: 3.628 ± 1.949
0.726LysTrp: 0.726 ± 0.852
5.08LysTyr: 5.08 ± 2.281
0.0LysXaa: 0.0 ± 0.0
Leu
3.628LeuAla: 3.628 ± 1.562
0.726LeuCys: 0.726 ± 0.518
3.628LeuAsp: 3.628 ± 1.154
5.806LeuGlu: 5.806 ± 2.913
2.903LeuPhe: 2.903 ± 0.976
5.08LeuGly: 5.08 ± 1.954
0.0LeuHis: 0.0 ± 0.0
1.451LeuIle: 1.451 ± 0.701
5.08LeuLys: 5.08 ± 3.268
2.177LeuLeu: 2.177 ± 0.916
2.177LeuMet: 2.177 ± 0.908
4.354LeuAsn: 4.354 ± 1.808
4.354LeuPro: 4.354 ± 2.246
2.177LeuGln: 2.177 ± 0.56
1.451LeuArg: 1.451 ± 0.6
2.177LeuSer: 2.177 ± 1.488
5.08LeuThr: 5.08 ± 1.953
1.451LeuVal: 1.451 ± 0.717
2.177LeuTrp: 2.177 ± 0.914
1.451LeuTyr: 1.451 ± 1.291
0.0LeuXaa: 0.0 ± 0.0
Met
5.806MetAla: 5.806 ± 2.787
1.451MetCys: 1.451 ± 0.6
0.726MetAsp: 0.726 ± 0.518
2.177MetGlu: 2.177 ± 1.555
0.0MetPhe: 0.0 ± 0.0
2.903MetGly: 2.903 ± 1.312
0.0MetHis: 0.0 ± 0.0
3.628MetIle: 3.628 ± 1.328
3.628MetLys: 3.628 ± 1.182
0.0MetLeu: 0.0 ± 0.0
0.726MetMet: 0.726 ± 0.852
1.451MetAsn: 1.451 ± 1.036
2.903MetPro: 2.903 ± 0.855
3.628MetGln: 3.628 ± 0.774
0.0MetArg: 0.0 ± 0.0
1.451MetSer: 1.451 ± 0.6
0.0MetThr: 0.0 ± 0.0
0.726MetVal: 0.726 ± 0.518
0.0MetTrp: 0.0 ± 0.0
0.726MetTyr: 0.726 ± 0.518
0.0MetXaa: 0.0 ± 0.0
Asn
4.354AsnAla: 4.354 ± 1.901
0.726AsnCys: 0.726 ± 0.65
1.451AsnAsp: 1.451 ± 1.299
2.903AsnGlu: 2.903 ± 1.062
0.726AsnPhe: 0.726 ± 0.834
3.628AsnGly: 3.628 ± 2.174
0.0AsnHis: 0.0 ± 0.0
3.628AsnIle: 3.628 ± 0.963
5.806AsnLys: 5.806 ± 1.23
5.806AsnLeu: 5.806 ± 0.575
1.451AsnMet: 1.451 ± 0.717
5.806AsnAsn: 5.806 ± 2.7
4.354AsnPro: 4.354 ± 1.382
2.177AsnGln: 2.177 ± 1.488
5.806AsnArg: 5.806 ± 3.445
5.806AsnSer: 5.806 ± 1.607
4.354AsnThr: 4.354 ± 0.964
0.0AsnVal: 0.0 ± 0.0
0.726AsnTrp: 0.726 ± 0.852
5.806AsnTyr: 5.806 ± 0.983
0.0AsnXaa: 0.0 ± 0.0
Pro
0.726ProAla: 0.726 ± 0.834
0.726ProCys: 0.726 ± 0.65
2.177ProAsp: 2.177 ± 1.555
4.354ProGlu: 4.354 ± 1.63
2.177ProPhe: 2.177 ± 1.193
2.177ProGly: 2.177 ± 1.555
1.451ProHis: 1.451 ± 1.299
6.531ProIle: 6.531 ± 1.914
2.177ProLys: 2.177 ± 1.193
2.903ProLeu: 2.903 ± 1.237
2.903ProMet: 2.903 ± 1.359
0.726ProAsn: 0.726 ± 0.867
1.451ProPro: 1.451 ± 0.6
2.903ProGln: 2.903 ± 2.073
1.451ProArg: 1.451 ± 1.06
0.726ProSer: 0.726 ± 0.852
2.903ProThr: 2.903 ± 1.402
2.177ProVal: 2.177 ± 1.555
0.726ProTrp: 0.726 ± 0.65
0.726ProTyr: 0.726 ± 0.518
0.0ProXaa: 0.0 ± 0.0
Gln
3.628GlnAla: 3.628 ± 1.562
0.0GlnCys: 0.0 ± 0.0
1.451GlnAsp: 1.451 ± 0.6
5.08GlnGlu: 5.08 ± 2.121
0.0GlnPhe: 0.0 ± 0.0
2.177GlnGly: 2.177 ± 1.488
0.726GlnHis: 0.726 ± 0.65
3.628GlnIle: 3.628 ± 0.789
3.628GlnLys: 3.628 ± 1.843
2.177GlnLeu: 2.177 ± 1.405
2.177GlnMet: 2.177 ± 0.914
2.177GlnAsn: 2.177 ± 0.908
2.903GlnPro: 2.903 ± 1.601
0.726GlnGln: 0.726 ± 0.518
5.08GlnArg: 5.08 ± 2.144
2.903GlnSer: 2.903 ± 1.434
2.177GlnThr: 2.177 ± 1.555
1.451GlnVal: 1.451 ± 1.036
2.177GlnTrp: 2.177 ± 0.916
2.177GlnTyr: 2.177 ± 1.303
0.0GlnXaa: 0.0 ± 0.0
Arg
2.903ArgAla: 2.903 ± 0.979
0.726ArgCys: 0.726 ± 0.65
0.726ArgAsp: 0.726 ± 0.852
2.903ArgGlu: 2.903 ± 1.175
0.726ArgPhe: 0.726 ± 0.518
2.177ArgGly: 2.177 ± 1.193
0.0ArgHis: 0.0 ± 0.0
2.177ArgIle: 2.177 ± 1.793
3.628ArgLys: 3.628 ± 1.318
3.628ArgLeu: 3.628 ± 1.7
1.451ArgMet: 1.451 ± 0.6
1.451ArgAsn: 1.451 ± 1.291
3.628ArgPro: 3.628 ± 1.063
2.903ArgGln: 2.903 ± 0.979
1.451ArgArg: 1.451 ± 1.06
3.628ArgSer: 3.628 ± 1.562
2.903ArgThr: 2.903 ± 1.175
2.177ArgVal: 2.177 ± 1.793
0.0ArgTrp: 0.0 ± 0.0
2.903ArgTyr: 2.903 ± 0.556
0.0ArgXaa: 0.0 ± 0.0
Ser
7.257SerAla: 7.257 ± 3.515
0.0SerCys: 0.0 ± 0.0
2.903SerAsp: 2.903 ± 1.167
7.983SerGlu: 7.983 ± 1.046
2.903SerPhe: 2.903 ± 1.359
5.08SerGly: 5.08 ± 1.784
0.0SerHis: 0.0 ± 0.0
3.628SerIle: 3.628 ± 1.355
3.628SerLys: 3.628 ± 1.111
5.08SerLeu: 5.08 ± 0.922
0.0SerMet: 0.0 ± 0.0
3.628SerAsn: 3.628 ± 4.261
1.451SerPro: 1.451 ± 0.6
2.903SerGln: 2.903 ± 2.316
0.726SerArg: 0.726 ± 0.518
6.531SerSer: 6.531 ± 3.174
2.903SerThr: 2.903 ± 0.855
1.451SerVal: 1.451 ± 0.717
0.726SerTrp: 0.726 ± 0.852
2.903SerTyr: 2.903 ± 0.556
0.0SerXaa: 0.0 ± 0.0
Thr
7.257ThrAla: 7.257 ± 3.472
0.0ThrCys: 0.0 ± 0.0
2.177ThrAsp: 2.177 ± 0.916
5.806ThrGlu: 5.806 ± 2.343
3.628ThrPhe: 3.628 ± 1.603
10.885ThrGly: 10.885 ± 0.761
0.0ThrHis: 0.0 ± 0.0
2.903ThrIle: 2.903 ± 1.2
3.628ThrLys: 3.628 ± 1.776
3.628ThrLeu: 3.628 ± 1.096
1.451ThrMet: 1.451 ± 0.6
5.806ThrAsn: 5.806 ± 2.869
2.177ThrPro: 2.177 ± 1.555
1.451ThrGln: 1.451 ± 1.036
3.628ThrArg: 3.628 ± 2.591
4.354ThrSer: 4.354 ± 1.134
3.628ThrThr: 3.628 ± 0.917
4.354ThrVal: 4.354 ± 1.134
2.177ThrTrp: 2.177 ± 0.56
2.903ThrTyr: 2.903 ± 0.556
0.0ThrXaa: 0.0 ± 0.0
Val
0.726ValAla: 0.726 ± 0.65
0.0ValCys: 0.0 ± 0.0
0.726ValAsp: 0.726 ± 0.852
3.628ValGlu: 3.628 ± 1.84
1.451ValPhe: 1.451 ± 1.036
2.903ValGly: 2.903 ± 1.983
0.0ValHis: 0.0 ± 0.0
1.451ValIle: 1.451 ± 1.036
2.177ValLys: 2.177 ± 0.916
0.726ValLeu: 0.726 ± 0.518
0.0ValMet: 0.0 ± 0.0
2.903ValAsn: 2.903 ± 2.073
1.451ValPro: 1.451 ± 1.036
2.177ValGln: 2.177 ± 0.908
1.451ValArg: 1.451 ± 1.06
2.903ValSer: 2.903 ± 0.855
5.806ValThr: 5.806 ± 1.036
1.451ValVal: 1.451 ± 1.036
0.0ValTrp: 0.0 ± 0.0
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
3.628TrpAla: 3.628 ± 1.063
0.0TrpCys: 0.0 ± 0.0
1.451TrpAsp: 1.451 ± 1.036
1.451TrpGlu: 1.451 ± 1.036
0.726TrpPhe: 0.726 ± 0.518
2.177TrpGly: 2.177 ± 1.656
0.726TrpHis: 0.726 ± 0.518
0.726TrpIle: 0.726 ± 0.65
2.177TrpLys: 2.177 ± 0.56
2.177TrpLeu: 2.177 ± 0.914
0.0TrpMet: 0.0 ± 0.0
0.726TrpAsn: 0.726 ± 0.65
0.0TrpPro: 0.0 ± 0.0
0.726TrpGln: 0.726 ± 0.852
0.726TrpArg: 0.726 ± 0.852
1.451TrpSer: 1.451 ± 0.717
0.726TrpThr: 0.726 ± 0.518
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.726TrpTyr: 0.726 ± 0.518
0.0TrpXaa: 0.0 ± 0.0
Tyr
5.08TyrAla: 5.08 ± 2.235
0.0TyrCys: 0.0 ± 0.0
2.903TyrAsp: 2.903 ± 1.754
5.806TyrGlu: 5.806 ± 1.537
2.903TyrPhe: 2.903 ± 1.2
2.903TyrGly: 2.903 ± 1.237
0.726TyrHis: 0.726 ± 0.65
3.628TyrIle: 3.628 ± 2.387
2.177TyrLys: 2.177 ± 1.138
2.177TyrLeu: 2.177 ± 0.908
0.0TyrMet: 0.0 ± 0.0
9.434TyrAsn: 9.434 ± 3.827
1.451TyrPro: 1.451 ± 1.06
2.177TyrGln: 2.177 ± 0.916
0.0TyrArg: 0.0 ± 0.0
3.628TyrSer: 3.628 ± 1.446
5.08TyrThr: 5.08 ± 2.081
1.451TyrVal: 1.451 ± 1.06
1.451TyrTrp: 1.451 ± 1.036
3.628TyrTyr: 3.628 ± 1.457
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1379 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski