Planctomicrobium piriforme

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctomicrobium

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5057 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A1I3HHL5|A0A1I3HHL5_9PLAN Uncharacterized protein OS=Planctomicrobium piriforme OX=1576369 GN=SAMN05421753_10869 PE=4 SV=1
MM1 pKa = 7.34LRR3 pKa = 11.84KK4 pKa = 9.68SLSSLLWSAWGRR16 pKa = 11.84LQAGSRR22 pKa = 11.84NSGRR26 pKa = 11.84GRR28 pKa = 11.84RR29 pKa = 11.84PLQRR33 pKa = 11.84HH34 pKa = 4.06SWNRR38 pKa = 11.84SLSRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84QSGVPALEE53 pKa = 3.89RR54 pKa = 11.84LEE56 pKa = 4.59ARR58 pKa = 11.84QLLSATASGAEE69 pKa = 4.02YY70 pKa = 10.25RR71 pKa = 11.84VNAYY75 pKa = 6.29TTSIQSQPSMAMDD88 pKa = 3.45SAGNYY93 pKa = 7.71VVTWQSYY100 pKa = 8.16GQDD103 pKa = 3.12GDD105 pKa = 4.03GYY107 pKa = 10.94GIYY110 pKa = 10.35AQRR113 pKa = 11.84FNAAGVAQGSEE124 pKa = 4.26FRR126 pKa = 11.84VNTYY130 pKa = 5.47TTYY133 pKa = 10.88YY134 pKa = 10.01QFNPSAAMDD143 pKa = 3.75SDD145 pKa = 3.88GDD147 pKa = 4.54FVITWVTDD155 pKa = 3.47QEE157 pKa = 4.69GSSNDD162 pKa = 3.04IYY164 pKa = 10.71AQRR167 pKa = 11.84YY168 pKa = 5.85NALGEE173 pKa = 4.1AQGTEE178 pKa = 4.16FRR180 pKa = 11.84VNTYY184 pKa = 7.54TTDD187 pKa = 3.45PQYY190 pKa = 11.45SPSAAMDD197 pKa = 3.51SDD199 pKa = 3.76GDD201 pKa = 4.95FVVTWQSYY209 pKa = 8.32GQDD212 pKa = 3.12GDD214 pKa = 4.03GYY216 pKa = 10.94GIYY219 pKa = 10.35AQRR222 pKa = 11.84FNAAGVAQGSEE233 pKa = 4.37FQVNTYY239 pKa = 6.31TTSYY243 pKa = 10.78QYY245 pKa = 9.89TASAAMDD252 pKa = 3.68SDD254 pKa = 3.92GDD256 pKa = 5.21FVITWQSYY264 pKa = 7.9GQDD267 pKa = 2.97GSGYY271 pKa = 9.91GIYY274 pKa = 9.89AQRR277 pKa = 11.84YY278 pKa = 5.86NAAGVAQGSEE288 pKa = 4.44FQVSSYY294 pKa = 7.25TTNNQNSSSAAMDD307 pKa = 3.43SDD309 pKa = 3.84GDD311 pKa = 4.86FVISWQSSGQDD322 pKa = 3.16GSGYY326 pKa = 10.49GVYY329 pKa = 10.57AKK331 pKa = 10.21RR332 pKa = 11.84FNASGVAQGSEE343 pKa = 4.18FRR345 pKa = 11.84VNTYY349 pKa = 7.27TTSSQYY355 pKa = 10.51NASPAMNAAGNFVISWQSSGQDD377 pKa = 3.49GNGLGIYY384 pKa = 8.55AQYY387 pKa = 11.04YY388 pKa = 7.9NAAGVAQGSEE398 pKa = 4.35FRR400 pKa = 11.84ANSYY404 pKa = 6.77TTNSQANPTAAMNSTGNFVIAWQSSGQDD432 pKa = 3.27GSSNGIYY439 pKa = 8.55SQRR442 pKa = 11.84YY443 pKa = 8.22SVGAPPTDD451 pKa = 3.02ISLSANTVSEE461 pKa = 4.11IASIGTTIGTLTATDD476 pKa = 3.79ADD478 pKa = 4.05SPEE481 pKa = 4.16SFTYY485 pKa = 10.5RR486 pKa = 11.84LLTNVEE492 pKa = 4.42SPANGLFLIDD502 pKa = 4.38GDD504 pKa = 4.28TLKK507 pKa = 10.07TAGALNYY514 pKa = 9.24EE515 pKa = 4.37AVHH518 pKa = 5.97QYY520 pKa = 10.99SVDD523 pKa = 3.42IEE525 pKa = 4.64VTDD528 pKa = 3.67STAQTFVKK536 pKa = 9.8TFTITVTDD544 pKa = 3.79SNEE547 pKa = 3.92FAVSAVSDD555 pKa = 3.96TNGDD559 pKa = 3.61TNTIAEE565 pKa = 4.16NAAAGTVGITASASDD580 pKa = 4.28ADD582 pKa = 3.97GTTNAVSYY590 pKa = 11.09SLTDD594 pKa = 3.29NAGGLFTIDD603 pKa = 2.99STTGVVSTTGPLNYY617 pKa = 7.74EE618 pKa = 4.02TATSYY623 pKa = 10.77TITVRR628 pKa = 11.84AEE630 pKa = 3.89SADD633 pKa = 3.62GSFSAADD640 pKa = 3.41FTITVTDD647 pKa = 3.35IDD649 pKa = 4.32EE650 pKa = 4.92SDD652 pKa = 3.53VSPITDD658 pKa = 3.44SDD660 pKa = 4.07SASNTIAEE668 pKa = 4.18NAAAGTVGITASASDD683 pKa = 4.18ADD685 pKa = 4.02GTTNTVTYY693 pKa = 10.72SLTDD697 pKa = 3.28NAGGLFTIDD706 pKa = 2.98SATGVVSTTGPLDD719 pKa = 3.46YY720 pKa = 9.48EE721 pKa = 4.51TATSYY726 pKa = 11.12SITVRR731 pKa = 11.84AEE733 pKa = 3.83SADD736 pKa = 3.6GSFSTADD743 pKa = 3.17FTIAVTDD750 pKa = 3.48VDD752 pKa = 4.0EE753 pKa = 5.68SDD755 pKa = 3.5VSSITDD761 pKa = 3.19TDD763 pKa = 3.81TADD766 pKa = 3.39NTITEE771 pKa = 4.34SADD774 pKa = 3.05AGTVGITASASDD786 pKa = 4.18ADD788 pKa = 4.02GTTNTVTYY796 pKa = 10.72SLTDD800 pKa = 3.28NAGGLFTIDD809 pKa = 2.99STTGVVSTTGPLNYY823 pKa = 7.74EE824 pKa = 4.02TATSYY829 pKa = 10.77TITVRR834 pKa = 11.84AEE836 pKa = 3.99SEE838 pKa = 4.17DD839 pKa = 3.84GSFSAADD846 pKa = 3.51FTVTVTDD853 pKa = 3.22VDD855 pKa = 3.87EE856 pKa = 5.7SDD858 pKa = 3.59VSPITDD864 pKa = 3.44SDD866 pKa = 4.07SASNTIAEE874 pKa = 4.32NADD877 pKa = 3.32AGTVGITASASDD889 pKa = 4.18ADD891 pKa = 4.02GTTNTVTYY899 pKa = 10.72SLTDD903 pKa = 3.28NAGGLFTIDD912 pKa = 2.99STTGVVSTTGPLNYY926 pKa = 7.74EE927 pKa = 4.02TATSYY932 pKa = 10.77TITVRR937 pKa = 11.84AEE939 pKa = 3.99SEE941 pKa = 4.15DD942 pKa = 3.8GSFSTTDD949 pKa = 3.28FTIAVTDD956 pKa = 3.48VDD958 pKa = 3.91EE959 pKa = 5.53SDD961 pKa = 3.43VSGVTDD967 pKa = 3.75TDD969 pKa = 3.7STDD972 pKa = 3.12NTISEE977 pKa = 4.15NAAAGPVGITAFASDD992 pKa = 4.78ADD994 pKa = 3.96GTTNAVSYY1002 pKa = 11.09SLTDD1006 pKa = 3.29NAGGLFTIDD1015 pKa = 3.95SISGVVSTTGPLDD1028 pKa = 3.46YY1029 pKa = 9.48EE1030 pKa = 4.51TATSYY1035 pKa = 11.12SITVRR1040 pKa = 11.84AEE1042 pKa = 3.83SADD1045 pKa = 3.48GSFSIADD1052 pKa = 3.26FTIAVTDD1059 pKa = 3.31VDD1061 pKa = 4.33EE1062 pKa = 5.36FDD1064 pKa = 3.68VSAIADD1070 pKa = 3.52ADD1072 pKa = 3.92AADD1075 pKa = 3.62NTIAEE1080 pKa = 4.45NADD1083 pKa = 3.59AGPVGITASASDD1095 pKa = 3.76SDD1097 pKa = 4.17GATNTVTYY1105 pKa = 10.86SLTDD1109 pKa = 3.48DD1110 pKa = 3.84AGGLFTIDD1118 pKa = 3.95SISGVVSTTGPLNYY1132 pKa = 7.7EE1133 pKa = 4.02TATSYY1138 pKa = 11.1SITVRR1143 pKa = 11.84AEE1145 pKa = 3.83SADD1148 pKa = 3.31GSFSTEE1154 pKa = 3.47NFTIAVTDD1162 pKa = 3.55VNEE1165 pKa = 4.09FDD1167 pKa = 3.63VSDD1170 pKa = 4.93VIDD1173 pKa = 3.9TNCASNVIAEE1183 pKa = 4.22NAAAGPIGITAFADD1197 pKa = 4.13DD1198 pKa = 4.94EE1199 pKa = 5.2DD1200 pKa = 4.49GTTNGVTYY1208 pKa = 10.88SLTDD1212 pKa = 3.47DD1213 pKa = 3.84AGGLFTINSCTGVVSTTGPLDD1234 pKa = 3.4YY1235 pKa = 9.46EE1236 pKa = 4.7TACSYY1241 pKa = 11.03SITVRR1246 pKa = 11.84AEE1248 pKa = 3.83SADD1251 pKa = 3.5GSFSMADD1258 pKa = 3.19FTVNVLNVNEE1268 pKa = 4.45SPVISGVTGSTSYY1281 pKa = 10.86IEE1283 pKa = 4.03NAAPRR1288 pKa = 11.84ILTTDD1293 pKa = 3.51GVINDD1298 pKa = 4.51PDD1300 pKa = 4.09GNFCGGSLTVRR1311 pKa = 11.84FRR1313 pKa = 11.84GFSEE1317 pKa = 3.85TGDD1320 pKa = 3.49RR1321 pKa = 11.84LSILSVGTSTGQISVTGNDD1340 pKa = 2.98VFYY1343 pKa = 11.1GCTLLGTVTSDD1354 pKa = 3.06GTGGQNLVIQLAAGADD1370 pKa = 3.61NAGVQQLLRR1379 pKa = 11.84SITYY1383 pKa = 10.31ASVSEE1388 pKa = 4.4NPSTTQRR1395 pKa = 11.84RR1396 pKa = 11.84VEE1398 pKa = 4.1FVLKK1402 pKa = 10.74DD1403 pKa = 3.78GVGTASNVGAKK1414 pKa = 8.29VVRR1417 pKa = 11.84VTAVNDD1423 pKa = 3.52KK1424 pKa = 10.64PVITGVTGSTTYY1436 pKa = 10.44TEE1438 pKa = 4.01NAAPLVLATDD1448 pKa = 4.72GVISDD1453 pKa = 4.81LDD1455 pKa = 4.12DD1456 pKa = 3.95NLGEE1460 pKa = 4.28GSLTVRR1466 pKa = 11.84FNGFSEE1472 pKa = 4.47ADD1474 pKa = 3.43DD1475 pKa = 3.88RR1476 pKa = 11.84LSILSVGTGDD1486 pKa = 3.68GQISVTGNDD1495 pKa = 3.0VFYY1498 pKa = 10.94GGSLLGTISSDD1509 pKa = 3.04GTGGQNLVIQLASGASSEE1527 pKa = 5.05AVQQLLRR1534 pKa = 11.84SITYY1538 pKa = 10.31ASVSEE1543 pKa = 4.38NPNTTQRR1550 pKa = 11.84RR1551 pKa = 11.84VEE1553 pKa = 3.82FALRR1557 pKa = 11.84DD1558 pKa = 3.48GDD1560 pKa = 4.03GANSNVGARR1569 pKa = 11.84IVKK1572 pKa = 9.54VKK1574 pKa = 10.51SVNDD1578 pKa = 3.55KK1579 pKa = 10.76PVITGVTGTATYY1591 pKa = 10.26SKK1593 pKa = 10.54SGLPIALATGGDD1605 pKa = 3.84VSDD1608 pKa = 5.77LDD1610 pKa = 3.66WNMAGGSLTARR1621 pKa = 11.84FNGFSEE1627 pKa = 4.58ANDD1630 pKa = 3.63RR1631 pKa = 11.84LSIISGGTGTGEE1643 pKa = 3.97INVSGNDD1650 pKa = 3.2VYY1652 pKa = 11.82YY1653 pKa = 10.5EE1654 pKa = 4.23GDD1656 pKa = 4.05LIGSITSNGIGGQALTITLTAAATPDD1682 pKa = 3.51AVRR1685 pKa = 11.84HH1686 pKa = 5.6LLHH1689 pKa = 6.52SLTYY1693 pKa = 10.57ASDD1696 pKa = 3.44STTPTTTNRR1705 pKa = 11.84RR1706 pKa = 11.84VEE1708 pKa = 4.13FLLTDD1713 pKa = 3.61SSGAKK1718 pKa = 10.05SNTAARR1724 pKa = 11.84VVKK1727 pKa = 10.15FVSS1730 pKa = 3.15

Molecular weight:
178.39 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A1I3LYJ1|A0A1I3LYJ1_9PLAN Putative signal transducing protein OS=Planctomicrobium piriforme OX=1576369 GN=SAMN05421753_113106 PE=4 SV=1
MM1 pKa = 7.66AVILLIALMSNRR13 pKa = 11.84QPSMQQSSSVRR24 pKa = 11.84STSAQTVSNRR34 pKa = 11.84NAQTQRR40 pKa = 11.84GPLRR44 pKa = 11.84RR45 pKa = 11.84LVGRR49 pKa = 11.84MRR51 pKa = 11.84NN52 pKa = 3.38

Molecular weight:
5.8 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5057

0

5057

1801768

27

9591

356.3

39.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.904 ± 0.037

1.18 ± 0.015

5.482 ± 0.029

5.907 ± 0.038

3.803 ± 0.023

7.752 ± 0.044

2.136 ± 0.016

4.895 ± 0.023

3.673 ± 0.033

10.345 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.135 ± 0.017

3.209 ± 0.031

5.522 ± 0.031

4.446 ± 0.026

6.463 ± 0.043

6.282 ± 0.036

5.694 ± 0.054

7.24 ± 0.029

1.543 ± 0.017

2.387 ± 0.021

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski