Desulfallas gibsoniae DSM 7213

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Desulfallaceae; Desulfoscipio; Desulfoscipio gibsoniae

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4313 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R4KRH9|R4KRH9_9FIRM Germination protease OS=Desulfallas gibsoniae DSM 7213 OX=767817 GN=gpr PE=3 SV=1
MM1 pKa = 7.84SDD3 pKa = 3.74LKK5 pKa = 11.38SKK7 pKa = 10.34VAYY10 pKa = 9.99LQGLASGMNVEE21 pKa = 4.8ADD23 pKa = 3.6SKK25 pKa = 10.8EE26 pKa = 3.84GKK28 pKa = 10.15LLGGIIDD35 pKa = 3.99VLDD38 pKa = 3.98EE39 pKa = 4.14FAEE42 pKa = 4.38SFSEE46 pKa = 4.45LEE48 pKa = 3.96EE49 pKa = 4.14SQEE52 pKa = 3.79QLEE55 pKa = 4.84EE56 pKa = 4.11YY57 pKa = 11.02VEE59 pKa = 4.2TLDD62 pKa = 3.62EE63 pKa = 5.13DD64 pKa = 5.54LYY66 pKa = 10.81TLEE69 pKa = 5.2NDD71 pKa = 3.25MHH73 pKa = 8.09DD74 pKa = 4.18GEE76 pKa = 5.14DD77 pKa = 3.45LEE79 pKa = 5.65EE80 pKa = 4.48YY81 pKa = 10.33MEE83 pKa = 4.41VDD85 pKa = 4.0CPRR88 pKa = 11.84CGEE91 pKa = 4.31TVLFDD96 pKa = 3.93PGIIEE101 pKa = 4.89DD102 pKa = 3.74EE103 pKa = 4.82DD104 pKa = 4.45IIEE107 pKa = 4.38VTCPNCDD114 pKa = 2.5EE115 pKa = 4.37VVFVNDD121 pKa = 5.22DD122 pKa = 3.64DD123 pKa = 6.16FEE125 pKa = 4.51TADD128 pKa = 3.91EE129 pKa = 4.37PEE131 pKa = 4.31ILHH134 pKa = 6.16SRR136 pKa = 11.84NSVIEE141 pKa = 3.79EE142 pKa = 4.52DD143 pKa = 3.38II144 pKa = 4.4

Molecular weight: 16.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R4KGV0|R4KGV0_9FIRM RNA polymerase sigma factor SigA OS=Desulfallas gibsoniae DSM 7213 OX=767817 GN=sigA PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 9.68QPKK8 pKa = 8.57NRR10 pKa = 11.84QRR12 pKa = 11.84KK13 pKa = 8.2KK14 pKa = 8.3VHH16 pKa = 5.86GFLKK20 pKa = 10.58RR21 pKa = 11.84MSTKK25 pKa = 10.48AGQNVIKK32 pKa = 10.48RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.64GRR39 pKa = 11.84KK40 pKa = 8.84KK41 pKa = 10.59LSAA44 pKa = 3.95

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4313

0

4313

1287869

29

2740

298.6

33.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.088 ± 0.045

1.295 ± 0.02

5.213 ± 0.029

6.594 ± 0.039

3.834 ± 0.025

7.638 ± 0.036

1.895 ± 0.017

7.129 ± 0.037

5.924 ± 0.036

9.943 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.737 ± 0.019

4.275 ± 0.027

4.172 ± 0.024

3.651 ± 0.024

5.242 ± 0.038

5.303 ± 0.028

5.147 ± 0.034

7.44 ± 0.034

1.024 ± 0.015

3.455 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski