Sulfurimonas hongkongensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Thiovulaceae; Sulfurimonas

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2290 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T0KZV5|T0KZV5_9PROT Methyl-accepting chemotaxis protein OS=Sulfurimonas hongkongensis OX=1172190 GN=M947_08075 PE=4 SV=1
MM1 pKa = 7.32FVQDD5 pKa = 5.17DD6 pKa = 4.32GLFVQDD12 pKa = 4.22GGLFVQDD19 pKa = 4.56DD20 pKa = 4.46GLFVQSDD27 pKa = 4.02GLFVQDD33 pKa = 4.64DD34 pKa = 4.38ACPVIPCLTRR44 pKa = 11.84NLVYY48 pKa = 10.86KK49 pKa = 10.04LIRR52 pKa = 11.84GFNTLYY58 pKa = 11.05

Molecular weight: 6.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T0JGK4|T0JGK4_9PROT Response regulatory domain-containing protein OS=Sulfurimonas hongkongensis OX=1172190 GN=M947_02355 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.38RR3 pKa = 11.84TYY5 pKa = 9.96QPHH8 pKa = 4.86STPRR12 pKa = 11.84KK13 pKa = 6.98RR14 pKa = 11.84THH16 pKa = 6.14GFRR19 pKa = 11.84HH20 pKa = 6.28RR21 pKa = 11.84MATKK25 pKa = 10.15NGRR28 pKa = 11.84NIINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.01GRR39 pKa = 11.84KK40 pKa = 8.53KK41 pKa = 10.86LSVV44 pKa = 3.15

Molecular weight: 5.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2290

0

2290

709285

29

2194

309.7

34.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.812 ± 0.054

0.86 ± 0.019

5.966 ± 0.045

7.137 ± 0.054

4.882 ± 0.039

5.668 ± 0.057

1.867 ± 0.021

8.557 ± 0.044

8.643 ± 0.062

9.744 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.623 ± 0.025

4.971 ± 0.043

2.809 ± 0.029

2.886 ± 0.029

3.56 ± 0.033

7.236 ± 0.041

4.963 ± 0.043

6.228 ± 0.047

0.694 ± 0.018

3.894 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski