Amino acid dipepetide frequency for Botryosphaeria parva (strain UCR-NP2) (Grapevine canker fungus) (Neofusicoccum parvum)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
12.861AlaAla: 12.861 ± 0.096
1.173AlaCys: 1.173 ± 0.018
5.395AlaAsp: 5.395 ± 0.037
5.948AlaGlu: 5.948 ± 0.05
3.649AlaPhe: 3.649 ± 0.03
7.218AlaGly: 7.218 ± 0.052
2.055AlaHis: 2.055 ± 0.025
4.341AlaIle: 4.341 ± 0.034
4.476AlaLys: 4.476 ± 0.041
8.856AlaLeu: 8.856 ± 0.061
2.163AlaMet: 2.163 ± 0.023
3.296AlaAsn: 3.296 ± 0.029
5.484AlaPro: 5.484 ± 0.05
3.736AlaGln: 3.736 ± 0.031
5.496AlaArg: 5.496 ± 0.045
7.446AlaSer: 7.446 ± 0.052
5.805AlaThr: 5.805 ± 0.038
6.452AlaVal: 6.452 ± 0.048
1.425AlaTrp: 1.425 ± 0.017
2.522AlaTyr: 2.522 ± 0.027
0.0AlaXaa: 0.0 ± 0.0
Cys
1.045CysAla: 1.045 ± 0.018
0.204CysCys: 0.204 ± 0.007
0.612CysAsp: 0.612 ± 0.013
0.563CysGlu: 0.563 ± 0.011
0.52CysPhe: 0.52 ± 0.012
0.926CysGly: 0.926 ± 0.017
0.277CysHis: 0.277 ± 0.007
0.632CysIle: 0.632 ± 0.012
0.469CysLys: 0.469 ± 0.011
1.093CysLeu: 1.093 ± 0.018
0.275CysMet: 0.275 ± 0.008
0.405CysAsn: 0.405 ± 0.01
0.607CysPro: 0.607 ± 0.014
0.383CysGln: 0.383 ± 0.01
0.66CysArg: 0.66 ± 0.012
0.799CysSer: 0.799 ± 0.013
0.657CysThr: 0.657 ± 0.014
0.82CysVal: 0.82 ± 0.013
0.186CysTrp: 0.186 ± 0.006
0.363CysTyr: 0.363 ± 0.01
0.0CysXaa: 0.0 ± 0.0
Asp
5.906AspAla: 5.906 ± 0.048
0.609AspCys: 0.609 ± 0.013
4.636AspAsp: 4.636 ± 0.057
4.736AspGlu: 4.736 ± 0.052
2.361AspPhe: 2.361 ± 0.025
4.613AspGly: 4.613 ± 0.038
1.151AspHis: 1.151 ± 0.015
2.819AspIle: 2.819 ± 0.028
2.486AspLys: 2.486 ± 0.03
4.969AspLeu: 4.969 ± 0.039
1.256AspMet: 1.256 ± 0.015
1.785AspAsn: 1.785 ± 0.025
3.525AspPro: 3.525 ± 0.03
1.791AspGln: 1.791 ± 0.02
2.931AspArg: 2.931 ± 0.029
3.748AspSer: 3.748 ± 0.036
2.894AspThr: 2.894 ± 0.025
4.138AspVal: 4.138 ± 0.033
0.964AspTrp: 0.964 ± 0.015
1.711AspTyr: 1.711 ± 0.021
0.0AspXaa: 0.0 ± 0.0
Glu
5.917GluAla: 5.917 ± 0.045
0.555GluCys: 0.555 ± 0.012
4.291GluAsp: 4.291 ± 0.045
5.799GluGlu: 5.799 ± 0.068
1.97GluPhe: 1.97 ± 0.02
4.067GluGly: 4.067 ± 0.031
1.413GluHis: 1.413 ± 0.019
2.867GluIle: 2.867 ± 0.024
4.036GluLys: 4.036 ± 0.046
5.338GluLeu: 5.338 ± 0.045
1.516GluMet: 1.516 ± 0.019
2.142GluAsn: 2.142 ± 0.028
2.702GluPro: 2.702 ± 0.034
2.54GluGln: 2.54 ± 0.029
4.059GluArg: 4.059 ± 0.04
3.642GluSer: 3.642 ± 0.041
3.258GluThr: 3.258 ± 0.029
3.74GluVal: 3.74 ± 0.03
0.959GluTrp: 0.959 ± 0.015
1.681GluTyr: 1.681 ± 0.02
0.0GluXaa: 0.0 ± 0.0
Phe
3.605PheAla: 3.605 ± 0.031
0.541PheCys: 0.541 ± 0.012
2.448PheAsp: 2.448 ± 0.026
2.221PheGlu: 2.221 ± 0.025
1.801PhePhe: 1.801 ± 0.024
3.079PheGly: 3.079 ± 0.029
0.86PheHis: 0.86 ± 0.015
1.745PheIle: 1.745 ± 0.021
1.559PheLys: 1.559 ± 0.021
3.445PheLeu: 3.445 ± 0.034
0.817PheMet: 0.817 ± 0.013
1.505PheAsn: 1.505 ± 0.021
1.905PhePro: 1.905 ± 0.023
1.323PheGln: 1.323 ± 0.018
1.891PheArg: 1.891 ± 0.023
2.836PheSer: 2.836 ± 0.028
2.255PheThr: 2.255 ± 0.024
2.681PheVal: 2.681 ± 0.03
0.687PheTrp: 0.687 ± 0.014
1.206PheTyr: 1.206 ± 0.017
0.0PheXaa: 0.0 ± 0.0
Gly
6.755GlyAla: 6.755 ± 0.05
0.886GlyCys: 0.886 ± 0.015
3.964GlyAsp: 3.964 ± 0.035
4.083GlyGlu: 4.083 ± 0.037
3.043GlyPhe: 3.043 ± 0.031
6.904GlyGly: 6.904 ± 0.076
1.626GlyHis: 1.626 ± 0.02
3.482GlyIle: 3.482 ± 0.034
3.666GlyLys: 3.666 ± 0.037
6.21GlyLeu: 6.21 ± 0.047
1.704GlyMet: 1.704 ± 0.024
2.536GlyAsn: 2.536 ± 0.032
3.347GlyPro: 3.347 ± 0.034
2.507GlyGln: 2.507 ± 0.027
4.153GlyArg: 4.153 ± 0.035
5.585GlySer: 5.585 ± 0.045
4.227GlyThr: 4.227 ± 0.037
4.991GlyVal: 4.991 ± 0.043
1.308GlyTrp: 1.308 ± 0.018
2.264GlyTyr: 2.264 ± 0.024
0.0GlyXaa: 0.0 ± 0.0
His
2.132HisAla: 2.132 ± 0.025
0.306HisCys: 0.306 ± 0.009
1.269HisAsp: 1.269 ± 0.018
1.282HisGlu: 1.282 ± 0.019
0.934HisPhe: 0.934 ± 0.014
1.696HisGly: 1.696 ± 0.023
0.822HisHis: 0.822 ± 0.018
1.068HisIle: 1.068 ± 0.016
0.861HisLys: 0.861 ± 0.016
2.067HisLeu: 2.067 ± 0.024
0.485HisMet: 0.485 ± 0.011
0.758HisAsn: 0.758 ± 0.013
1.557HisPro: 1.557 ± 0.018
0.841HisGln: 0.841 ± 0.016
1.382HisArg: 1.382 ± 0.02
1.517HisSer: 1.517 ± 0.023
1.211HisThr: 1.211 ± 0.019
1.473HisVal: 1.473 ± 0.018
0.35HisTrp: 0.35 ± 0.009
0.707HisTyr: 0.707 ± 0.015
0.0HisXaa: 0.0 ± 0.0
Ile
4.317IleAla: 4.317 ± 0.037
0.652IleCys: 0.652 ± 0.012
2.774IleAsp: 2.774 ± 0.027
2.685IleGlu: 2.685 ± 0.027
1.903IlePhe: 1.903 ± 0.023
3.197IleGly: 3.197 ± 0.032
1.071IleHis: 1.071 ± 0.017
2.299IleIle: 2.299 ± 0.03
2.132IleLys: 2.132 ± 0.024
4.077IleLeu: 4.077 ± 0.038
0.993IleMet: 0.993 ± 0.016
1.758IleAsn: 1.758 ± 0.023
2.729IlePro: 2.729 ± 0.023
1.633IleGln: 1.633 ± 0.022
2.504IleArg: 2.504 ± 0.024
3.243IleSer: 3.243 ± 0.029
2.819IleThr: 2.819 ± 0.023
3.182IleVal: 3.182 ± 0.028
0.684IleTrp: 0.684 ± 0.014
1.385IleTyr: 1.385 ± 0.019
0.0IleXaa: 0.0 ± 0.0
Lys
4.604LysAla: 4.604 ± 0.043
0.432LysCys: 0.432 ± 0.009
2.907LysAsp: 2.907 ± 0.03
3.541LysGlu: 3.541 ± 0.036
1.493LysPhe: 1.493 ± 0.019
3.093LysGly: 3.093 ± 0.033
1.128LysHis: 1.128 ± 0.015
2.176LysIle: 2.176 ± 0.024
3.674LysLys: 3.674 ± 0.058
4.046LysLeu: 4.046 ± 0.039
1.05LysMet: 1.05 ± 0.017
1.746LysAsn: 1.746 ± 0.026
2.656LysPro: 2.656 ± 0.029
1.885LysGln: 1.885 ± 0.023
3.29LysArg: 3.29 ± 0.036
3.057LysSer: 3.057 ± 0.031
2.841LysThr: 2.841 ± 0.029
2.847LysVal: 2.847 ± 0.031
0.671LysTrp: 0.671 ± 0.012
1.385LysTyr: 1.385 ± 0.019
0.0LysXaa: 0.0 ± 0.0
Leu
8.696LeuAla: 8.696 ± 0.057
1.101LeuCys: 1.101 ± 0.017
5.238LeuAsp: 5.238 ± 0.039
5.334LeuGlu: 5.334 ± 0.046
3.423LeuPhe: 3.423 ± 0.033
6.035LeuGly: 6.035 ± 0.043
2.123LeuHis: 2.123 ± 0.02
3.659LeuIle: 3.659 ± 0.034
4.098LeuLys: 4.098 ± 0.036
8.088LeuLeu: 8.088 ± 0.061
1.785LeuMet: 1.785 ± 0.018
3.082LeuAsn: 3.082 ± 0.027
5.148LeuPro: 5.148 ± 0.038
3.473LeuGln: 3.473 ± 0.033
5.631LeuArg: 5.631 ± 0.044
6.506LeuSer: 6.506 ± 0.048
4.855LeuThr: 4.855 ± 0.033
5.603LeuVal: 5.603 ± 0.045
1.209LeuTrp: 1.209 ± 0.018
2.41LeuTyr: 2.41 ± 0.028
0.0LeuXaa: 0.0 ± 0.0
Met
2.404MetAla: 2.404 ± 0.024
0.248MetCys: 0.248 ± 0.008
1.271MetAsp: 1.271 ± 0.017
1.261MetGlu: 1.261 ± 0.017
0.775MetPhe: 0.775 ± 0.013
1.554MetGly: 1.554 ± 0.022
0.479MetHis: 0.479 ± 0.011
0.957MetIle: 0.957 ± 0.016
1.028MetLys: 1.028 ± 0.017
1.888MetLeu: 1.888 ± 0.022
0.568MetMet: 0.568 ± 0.012
0.776MetAsn: 0.776 ± 0.017
1.25MetPro: 1.25 ± 0.02
0.864MetGln: 0.864 ± 0.015
1.291MetArg: 1.291 ± 0.019
1.642MetSer: 1.642 ± 0.018
1.222MetThr: 1.222 ± 0.018
1.349MetVal: 1.349 ± 0.019
0.297MetTrp: 0.297 ± 0.009
0.543MetTyr: 0.543 ± 0.012
0.0MetXaa: 0.0 ± 0.0
Asn
3.409AsnAla: 3.409 ± 0.034
0.418AsnCys: 0.418 ± 0.01
1.918AsnAsp: 1.918 ± 0.024
1.922AsnGlu: 1.922 ± 0.024
1.42AsnPhe: 1.42 ± 0.019
3.11AsnGly: 3.11 ± 0.036
0.757AsnHis: 0.757 ± 0.015
1.887AsnIle: 1.887 ± 0.023
1.536AsnLys: 1.536 ± 0.022
3.051AsnLeu: 3.051 ± 0.03
0.81AsnMet: 0.81 ± 0.016
1.436AsnAsn: 1.436 ± 0.024
2.312AsnPro: 2.312 ± 0.029
1.187AsnGln: 1.187 ± 0.018
1.689AsnArg: 1.689 ± 0.02
2.357AsnSer: 2.357 ± 0.031
2.131AsnThr: 2.131 ± 0.027
2.38AsnVal: 2.38 ± 0.025
0.582AsnTrp: 0.582 ± 0.012
1.111AsnTyr: 1.111 ± 0.017
0.0AsnXaa: 0.0 ± 0.0
Pro
6.138ProAla: 6.138 ± 0.057
0.443ProCys: 0.443 ± 0.012
3.388ProAsp: 3.388 ± 0.033
3.764ProGlu: 3.764 ± 0.035
2.045ProPhe: 2.045 ± 0.021
3.987ProGly: 3.987 ± 0.037
1.305ProHis: 1.305 ± 0.02
2.253ProIle: 2.253 ± 0.026
2.526ProLys: 2.526 ± 0.031
4.488ProLeu: 4.488 ± 0.037
0.998ProMet: 0.998 ± 0.015
2.023ProAsn: 2.023 ± 0.025
4.553ProPro: 4.553 ± 0.062
2.251ProGln: 2.251 ± 0.027
3.061ProArg: 3.061 ± 0.028
4.923ProSer: 4.923 ± 0.051
3.703ProThr: 3.703 ± 0.033
3.482ProVal: 3.482 ± 0.036
0.759ProTrp: 0.759 ± 0.015
1.503ProTyr: 1.503 ± 0.021
0.0ProXaa: 0.0 ± 0.0
Gln
3.558GlnAla: 3.558 ± 0.03
0.411GlnCys: 0.411 ± 0.01
1.979GlnAsp: 1.979 ± 0.023
2.298GlnGlu: 2.298 ± 0.023
1.244GlnPhe: 1.244 ± 0.018
2.248GlnGly: 2.248 ± 0.024
1.016GlnHis: 1.016 ± 0.017
1.727GlnIle: 1.727 ± 0.019
1.908GlnLys: 1.908 ± 0.026
3.363GlnLeu: 3.363 ± 0.032
0.87GlnMet: 0.87 ± 0.015
1.397GlnAsn: 1.397 ± 0.019
2.336GlnPro: 2.336 ± 0.03
2.429GlnGln: 2.429 ± 0.043
2.506GlnArg: 2.506 ± 0.027
2.5GlnSer: 2.5 ± 0.025
2.105GlnThr: 2.105 ± 0.023
2.09GlnVal: 2.09 ± 0.021
0.572GlnTrp: 0.572 ± 0.011
1.138GlnTyr: 1.138 ± 0.016
0.0GlnXaa: 0.0 ± 0.0
Arg
5.319ArgAla: 5.319 ± 0.039
0.629ArgCys: 0.629 ± 0.012
3.346ArgAsp: 3.346 ± 0.031
3.786ArgGlu: 3.786 ± 0.039
2.165ArgPhe: 2.165 ± 0.023
3.761ArgGly: 3.761 ± 0.031
1.39ArgHis: 1.39 ± 0.019
2.702ArgIle: 2.702 ± 0.026
3.315ArgLys: 3.315 ± 0.037
5.27ArgLeu: 5.27 ± 0.042
1.297ArgMet: 1.297 ± 0.019
2.053ArgAsn: 2.053 ± 0.023
3.045ArgPro: 3.045 ± 0.029
2.358ArgGln: 2.358 ± 0.026
4.66ArgArg: 4.66 ± 0.046
3.921ArgSer: 3.921 ± 0.036
3.087ArgThr: 3.087 ± 0.026
3.505ArgVal: 3.505 ± 0.024
0.996ArgTrp: 0.996 ± 0.017
1.617ArgTyr: 1.617 ± 0.02
0.0ArgXaa: 0.0 ± 0.0
Ser
7.121SerAla: 7.121 ± 0.05
0.738SerCys: 0.738 ± 0.013
3.901SerAsp: 3.901 ± 0.039
3.62SerGlu: 3.62 ± 0.034
2.858SerPhe: 2.858 ± 0.03
5.462SerGly: 5.462 ± 0.048
1.562SerHis: 1.562 ± 0.02
3.429SerIle: 3.429 ± 0.032
3.328SerLys: 3.328 ± 0.035
6.249SerLeu: 6.249 ± 0.039
1.517SerMet: 1.517 ± 0.019
2.597SerAsn: 2.597 ± 0.03
4.508SerPro: 4.508 ± 0.05
2.574SerGln: 2.574 ± 0.024
3.925SerArg: 3.925 ± 0.032
7.174SerSer: 7.174 ± 0.066
4.892SerThr: 4.892 ± 0.045
4.321SerVal: 4.321 ± 0.037
1.059SerTrp: 1.059 ± 0.016
2.008SerTyr: 2.008 ± 0.024
0.0SerXaa: 0.0 ± 0.0
Thr
5.916ThrAla: 5.916 ± 0.042
0.696ThrCys: 0.696 ± 0.013
2.899ThrAsp: 2.899 ± 0.026
2.911ThrGlu: 2.911 ± 0.023
2.345ThrPhe: 2.345 ± 0.024
4.377ThrGly: 4.377 ± 0.037
1.233ThrHis: 1.233 ± 0.017
2.947ThrIle: 2.947 ± 0.028
2.505ThrLys: 2.505 ± 0.03
5.185ThrLeu: 5.185 ± 0.036
1.123ThrMet: 1.123 ± 0.017
2.072ThrAsn: 2.072 ± 0.027
4.117ThrPro: 4.117 ± 0.047
1.916ThrGln: 1.916 ± 0.02
2.853ThrArg: 2.853 ± 0.028
4.595ThrSer: 4.595 ± 0.039
4.284ThrThr: 4.284 ± 0.045
3.95ThrVal: 3.95 ± 0.035
0.893ThrTrp: 0.893 ± 0.014
1.723ThrTyr: 1.723 ± 0.02
0.0ThrXaa: 0.0 ± 0.0
Val
6.277ValAla: 6.277 ± 0.04
0.845ValCys: 0.845 ± 0.014
4.026ValAsp: 4.026 ± 0.034
4.261ValGlu: 4.261 ± 0.034
2.631ValPhe: 2.631 ± 0.024
4.595ValGly: 4.595 ± 0.04
1.37ValHis: 1.37 ± 0.017
2.898ValIle: 2.898 ± 0.032
2.984ValLys: 2.984 ± 0.031
5.791ValLeu: 5.791 ± 0.038
1.405ValMet: 1.405 ± 0.019
2.247ValAsn: 2.247 ± 0.023
3.705ValPro: 3.705 ± 0.035
2.37ValGln: 2.37 ± 0.024
3.625ValArg: 3.625 ± 0.032
4.345ValSer: 4.345 ± 0.04
3.574ValThr: 3.574 ± 0.034
4.929ValVal: 4.929 ± 0.043
0.971ValTrp: 0.971 ± 0.016
1.891ValTyr: 1.891 ± 0.025
0.0ValXaa: 0.0 ± 0.0
Trp
1.328TrpAla: 1.328 ± 0.018
0.2TrpCys: 0.2 ± 0.008
0.994TrpAsp: 0.994 ± 0.016
0.902TrpGlu: 0.902 ± 0.016
0.591TrpPhe: 0.591 ± 0.012
1.005TrpGly: 1.005 ± 0.018
0.381TrpHis: 0.381 ± 0.011
0.742TrpIle: 0.742 ± 0.013
0.809TrpLys: 0.809 ± 0.014
1.387TrpLeu: 1.387 ± 0.018
0.382TrpMet: 0.382 ± 0.009
0.631TrpAsn: 0.631 ± 0.011
0.625TrpPro: 0.625 ± 0.011
0.573TrpGln: 0.573 ± 0.011
1.028TrpArg: 1.028 ± 0.015
1.037TrpSer: 1.037 ± 0.018
0.99TrpThr: 0.99 ± 0.017
0.989TrpVal: 0.989 ± 0.013
0.291TrpTrp: 0.291 ± 0.009
0.48TrpTyr: 0.48 ± 0.013
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.489TyrAla: 2.489 ± 0.025
0.41TyrCys: 0.41 ± 0.011
1.774TyrAsp: 1.774 ± 0.02
1.577TyrGlu: 1.577 ± 0.022
1.24TyrPhe: 1.24 ± 0.019
2.312TyrGly: 2.312 ± 0.025
0.702TyrHis: 0.702 ± 0.015
1.408TyrIle: 1.408 ± 0.018
1.127TyrLys: 1.127 ± 0.018
2.638TyrLeu: 2.638 ± 0.03
0.651TyrMet: 0.651 ± 0.013
1.175TyrAsn: 1.175 ± 0.017
1.48TyrPro: 1.48 ± 0.022
1.06TyrGln: 1.06 ± 0.017
1.584TyrArg: 1.584 ± 0.018
1.969TyrSer: 1.969 ± 0.027
1.73TyrThr: 1.73 ± 0.026
1.819TyrVal: 1.819 ± 0.021
0.504TyrTrp: 0.504 ± 0.011
1.023TyrTyr: 1.023 ± 0.019
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 10365 proteins (4404707 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski